Pseudomonas sp. RIT412 RIT412_S3_48

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. RIT412 RIT412_S3_48 is characterized by having a single replicon, indicating a streamlined genomic structure that could facilitate efficient replication and adaptation. This species is cataloged under the accession number QBJA00000000.2, which provides a reference point for researchers interested in its genetic makeup and potential applications. The Pseudomonas genus is known for its metabolic versatility and ability to thrive in diverse environments, often making it a subject of interest in bioremediation and biotechnology. While specific metabolic traits of RIT412 RIT412_S3_48 are not provided, related Pseudomonas species are recognized for their capacity to degrade various organic pollutants, suggesting potential ecological roles in environmental cleanup processes. The presence of a single replicon could imply certain evolutionary advantages, such as reduced genomic complexity and rapid response to environmental changes. This trait may enhance the organism's adaptability in fluctuating environments, positioning it as a potentially important player in microbial communities, where it could interact with other microorganisms and contribute to nutrient cycling. In summary, Pseudomonas sp. RIT412 RIT412_S3_48, with its single replicon and classification, aligns with the broader characteristics of the Pseudomonas genus, hinting at its ecological significance in diverse habitats and its potential utility in biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. RIT412
StrainRIT412_S3_48

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. RIT412 RIT412_S3_48
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. RIT412 RIT412_S3_48, whole genome shotgun

Gene Summary

Adenine Count

1172267 bp

Thymine Count

1190975 bp

Guanine Count

1803330 bp

Cytosine Count

1757576 bp

Genome Length

5924148 bp

Protein-coding Genes

5139 genes

Non-Coding Genes

125 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system contractile sheath small subunitDBY65_013990Not AvailablePositive3103858 - 310437318642.4
type vi secretion system contractile sheath large subunitDBY65_013995Not AvailablePositive3104389 - 310588255471.2
hcp1 family type vi secretion system effectorDBY65_014000Not AvailablePositive3105979 - 310646717512.9
type vi secretion system baseplate subunit tsseDBY65_014005Not AvailablePositive3106559 - 310706218487.1
type vi secretion system baseplate subunit tssfDBY65_014010Not AvailablePositive3107059 - 310891869331.0
type vi secretion system baseplate subunit tssgDBY65_014015Not AvailablePositive3108882 - 310996140632.1
type vi secretion system atpase tsshDBY65_014020Not AvailablePositive3109954 - 311263598174.2
type vi secretion system tip protein vgrgDBY65_014025Not AvailablePositive3112695 - 311463573004.3
hypothetical proteinDBY65_014030Not AvailableNegative3115443 - 31155925369.43
hypothetical proteinDBY65_014035Not AvailableNegative3115713 - 311610814672.2

Displaying genes 2831 – 2840 of 5264 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.