Paraburkholderia caribensis strain TJ182

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Paraburkholderia

Description

Paraburkholderia caribensis strain TJ182 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates its motility. This strain is part of the diverse Paraburkholderia genus, known for its ecological versatility and ability to inhabit various environments. Specifically, strain TJ182 is found in vertisol soil, a type of soil recognized for its high clay content and capacity to retain moisture, which can influence microbial community dynamics. The genomic structure of Paraburkholderia caribensis strain TJ182 includes a single replicon, suggesting a streamlined genetic organization that may contribute to its adaptability in its specific habitat. The strain is cataloged under the accession number PYUB00000000.1, which provides a reference for its genetic data and facilitates further research into its characteristics and potential applications. The ecological insight derived from the habitat of Paraburkholderia caribensis strain TJ182 highlights its role in soil microbiomes. Microorganisms like TJ182 can influence nutrient cycling and soil health, particularly in vertisol soils, where they may contribute to the degradation of organic matter and enhance soil fertility. Understanding the specific traits and functions of this strain can inform agricultural practices and soil management strategies, particularly in regions where vertisols are prevalent.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesParaburkholderia caribensis
Strainstrain TJ182

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatvertisol soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraburkholderia caribensis strain TJ182

Gene Summary

Adenine Count

1719493 bp

Thymine Count

1734753 bp

Guanine Count

2871026 bp

Cytosine Count

2880401 bp

Genome Length

9205673 bp

Protein-coding Genes

7990 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-alanyl-d-alanine carboxypeptidaseC9I56_21930Not AvailablePositive4846975 - 484782031472.5
type vi secretion system membrane subunit tssmC9I56_21935Not AvailablePositive4847987 - 4851835140317.0
type vi secretion system-associated protein tagfC9I56_21940Not AvailablePositive4851832 - 485282136219.4
ompa family proteinC9I56_21945Not AvailablePositive4852826 - 485377332550.6
type vi secretion system protein tssaC9I56_21950Not AvailableNegative4853787 - 485492641728.9
type vi secretion system atpase tsshC9I56_21955Not AvailableNegative4854941 - 485759596870.3
type vi secretion system baseplate subunit tssgC9I56_21960Not AvailableNegative4857642 - 485872740529.4
type vi secretion system baseplate subunit tssfC9I56_21965Not AvailableNegative4858691 - 486052968249.6
type vi secretion system baseplate subunit tsseC9I56_21970Not AvailableNegative4860585 - 486106417899.5
type vi secretion system tube protein hcpC9I56_21975Not AvailableNegative4861140 - 486164318306.4

Displaying genes 4271 – 4280 of 8076 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.