Paraburkholderia caribensis strain TJ182

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Paraburkholderia

Description

Paraburkholderia caribensis strain TJ182 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates its motility. This strain is part of the diverse Paraburkholderia genus, known for its ecological versatility and ability to inhabit various environments. Specifically, strain TJ182 is found in vertisol soil, a type of soil recognized for its high clay content and capacity to retain moisture, which can influence microbial community dynamics. The genomic structure of Paraburkholderia caribensis strain TJ182 includes a single replicon, suggesting a streamlined genetic organization that may contribute to its adaptability in its specific habitat. The strain is cataloged under the accession number PYUB00000000.1, which provides a reference for its genetic data and facilitates further research into its characteristics and potential applications. The ecological insight derived from the habitat of Paraburkholderia caribensis strain TJ182 highlights its role in soil microbiomes. Microorganisms like TJ182 can influence nutrient cycling and soil health, particularly in vertisol soils, where they may contribute to the degradation of organic matter and enhance soil fertility. Understanding the specific traits and functions of this strain can inform agricultural practices and soil management strategies, particularly in regions where vertisols are prevalent.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesParaburkholderia caribensis
Strainstrain TJ182

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatvertisol soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraburkholderia caribensis strain TJ182

Gene Summary

Adenine Count

1719493 bp

Thymine Count

1734753 bp

Guanine Count

2871026 bp

Cytosine Count

2880401 bp

Genome Length

9205673 bp

Protein-coding Genes

7990 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amino acid abc transporter atp-binding proteinC9I56_16510Not AvailableNegative3646509 - 364727628144.1
cysteine abc transporter permeaseC9I56_16515Not AvailableNegative3647280 - 364795724569.6
amino acid abc transporter substrate-binding proteinC9I56_16520Not AvailableNegative3647979 - 364876127734.8
dihydropyrimidinaseC9I56_16525Not AvailableNegative3649098 - 365054953130.8
nitrate reductaseC9I56_16530Not AvailableNegative3650588 - 365208753801.3
nad-dependent dihydropyrimidine dehydrogenase subunit preaC9I56_16535Not AvailableNegative3652127 - 365344047719.1
dihydropyrimidine dehydrogenaseC9I56_16540Not AvailableNegative3653502 - 365485146942.0
zn-dependent hydrolaseC9I56_16545Not AvailableNegative3654959 - 365623645748.8
tetr family transcriptional regulatorC9I56_16550Not AvailablePositive3656606 - 365732826987.2
benzoyl-coa 2,3-epoxidase subunit boxaC9I56_16555Not AvailableNegative3657342 - 365859246096.7

Displaying genes 3211 – 3220 of 8076 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.