Vibrio cholerae strain UG042

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio cholerae strain UG042 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe and demonstrates heterotrophic energy sourcing. This organism typically exists as single cells and possesses flagella, although it is non-motile. Strain UG042 thrives optimally at a temperature of 20°C and falls within the mesophilic temperature range. The strain is characterized by a complex biotic relationship, being free-living while also capable of infecting various hosts, including Homo sapiens, Mollusca, Mammalia, and Penaeus vannamei. This versatility in host range highlights the strain's adaptability to different ecological niches. Vibrio cholerae UG042 is implicated in a range of health effects in humans, including cholera, gastrointestinal infections, and various forms of sepsis and wound infections. The bacterium is well-known for causing severe diarrheal diseases and is linked to pandemic cholera outbreaks. These pathogenic traits underscore its significance in public health, particularly in contexts where water quality is compromised. The presence of a single replicon and two membranes suggests a simple yet effective genomic structure that may contribute to its pathogenic capabilities. The ecological insights drawn from the habitat diversity and host interactions of Vibrio cholerae UG042 indicate its potential role in aquatic environments and its implications for human health, particularly in relation to cholera outbreaks and associated diseases.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio cholerae
Strainstrain UG042

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Vibrio cholerae strain UG042
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Mollusca, Mammalia
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityHuman

Genome Summary

Vibrio cholerae strain UG042 NODE_124_length_200_cov_157.276,

Gene Summary

Adenine Count

1065427 bp

Thymine Count

1058535 bp

Guanine Count

962567 bp

Cytosine Count

957779 bp

Genome Length

4044573 bp

Protein-coding Genes

3744 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
replication proteinC9J66_18855Not AvailableNegative3988164 - 398973259746.5
xre family transcriptional regulatorC9J66_18860Not AvailablePositive3989894 - 399046020826.8
type ii toxin-antitoxin system rele/pare family toxinC9J66_18865Not AvailableNegative3990968 - 399125811247.9
type ii toxin-antitoxin system phd/yefm family antitoxinC9J66_18870Not AvailableNegative3991248 - 39914968937.75
hemagglutininC9J66_18880Not AvailablePositive3991761 - 39919527035.37
site-specific dna-methyltransferaseC9J66_18885Not AvailablePositive3992028 - 399272026808.1
voc family proteinC9J66_18890Not AvailablePositive3993140 - 399349913234.4
disulfide bond formation protein dsbdC9J66_18895Not AvailablePositive3993566 - 39937517339.46
duf3709 domain-containing proteinC9J66_18900Not AvailablePositive3993772 - 39940058921.21
hypothetical proteinC9J66_18905Not AvailablePositive3994273 - 399477919425.3

Displaying genes 3711 – 3720 of 3845 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
CholeraCausesPMC10103850
Ear infectionsCausesPMC10103850
Wound infectionsCausesPMC10103850
SepticaemiaCausesPMC10103850
Gastrointestinal infectionsCausesPMC10103850
Necrotizing fasciitisCausesPMC10103850
VibriosisCausesPMC10472736
PneumoniaCausesPMC12801787
GastroenteritisCausesPMC12801787
SinusitisCausesPMC12801787

Displaying health effects 1 – 10 of 38 in total