Photobacterium leiognathi strain ATCC 33979 CFSAN065438_114

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium leiognathi strain ATCC 33979 CFSAN065438_114 is characterized as a rod-shaped bacterium. This strain possesses flagella, indicating that it has the capability for motility, which can play a significant role in its ecological interactions and behavior in various environments. The genome of this strain is represented by a single replicon, which is a feature that can influence its genetic stability and replication processes. The accession number for this strain is PYOJ00000000.1, providing a reference for its genetic sequence and related research. In terms of ecological insights, the motility conferred by its flagella may allow Photobacterium leiognathi to navigate its environment effectively, potentially influencing its role in marine ecosystems, where it is often found. Its rod shape and flagellated nature suggest adaptations for life in aquatic habitats, where movement can be crucial for accessing nutrients, avoiding predation, or interacting with other microbial communities. Overall, these traits collectively contribute to understanding the ecological niche of Photobacterium leiognathi and its potential functions in marine microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium leiognathi
Strainstrain ATCC 33979 CFSAN065438_114

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium leiognathi strain ATCC 33979 CFSAN065438_114, whole

Gene Summary

Adenine Count

1430723 bp

Thymine Count

1425730 bp

Guanine Count

1005574 bp

Cytosine Count

1014105 bp

Genome Length

4876132 bp

Protein-coding Genes

4000 genes

Non-Coding Genes

156 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
murein dd-endopeptidase mepmCTM89_16705Not AvailableNegative3731235 - 373259350803.1
zinc abc transporter substrate-binding protein znuaCTM89_16710Not AvailableNegative3732597 - 373355034995.3
zinc abc transporter atp-binding protein znucCTM89_16715Not AvailablePositive3733716 - 373448028204.5
zinc abc transporter permease subunit znubCTM89_16720Not AvailablePositive3734477 - 373526227941.7
phox family phosphataseCTM89_16725Not AvailablePositive3735406 - 373746675885.2
succinate--coa ligase subunit alphaCTM89_16730Not AvailableNegative3737540 - 373841230029.3
adp-forming succinate--coa ligase subunit betaCTM89_16735Not AvailableNegative3738412 - 373957841370.8
2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferaseCTM89_16740Not AvailableNegative3739730 - 374093543950.9
2-oxoglutarate dehydrogenase e1 componentCTM89_16745Not AvailableNegative3740963 - 3743794105918.0
succinate dehydrogenase iron-sulfur subunitCTM89_16750Not AvailableNegative3743912 - 374462526191.8

Displaying genes 3261 – 3270 of 4156 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.