Photobacterium leiognathi strain ATCC 33979 CFSAN065438_114

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium leiognathi strain ATCC 33979 CFSAN065438_114 is characterized as a rod-shaped bacterium. This strain possesses flagella, indicating that it has the capability for motility, which can play a significant role in its ecological interactions and behavior in various environments. The genome of this strain is represented by a single replicon, which is a feature that can influence its genetic stability and replication processes. The accession number for this strain is PYOJ00000000.1, providing a reference for its genetic sequence and related research. In terms of ecological insights, the motility conferred by its flagella may allow Photobacterium leiognathi to navigate its environment effectively, potentially influencing its role in marine ecosystems, where it is often found. Its rod shape and flagellated nature suggest adaptations for life in aquatic habitats, where movement can be crucial for accessing nutrients, avoiding predation, or interacting with other microbial communities. Overall, these traits collectively contribute to understanding the ecological niche of Photobacterium leiognathi and its potential functions in marine microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium leiognathi
Strainstrain ATCC 33979 CFSAN065438_114

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium leiognathi strain ATCC 33979 CFSAN065438_114, whole

Gene Summary

Adenine Count

1430723 bp

Thymine Count

1425730 bp

Guanine Count

1005574 bp

Cytosine Count

1014105 bp

Genome Length

4876132 bp

Protein-coding Genes

4000 genes

Non-Coding Genes

156 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dihydroxy-acid dehydrataseCTM89_15570Not AvailablePositive3439936 - 344177765756.4
threonine ammonia-lyase, biosyntheticCTM89_15575Not AvailablePositive3441783 - 344333656829.0
transcriptional regulatorCTM89_15580Not AvailableNegative3443404 - 344379914981.2
xre family transcriptional regulatorCTM89_15585Not AvailableNegative3443964 - 344434114674.8
glutamine--fructose-6-phosphate transaminase (isomerizing)CTM89_15590Not AvailableNegative3444588 - 344642066948.2
hth domain-containing proteinCTM89_15595Not AvailableNegative3446444 - 344721727772.2
duf1040 domain-containing proteinCTM89_15600Not AvailableNegative3447455 - 344772110189.4
hypothetical proteinCTM89_15605Not AvailableNegative3447896 - 34480967424.8
fadr family transcriptional regulatorCTM89_15610Not AvailablePositive3448444 - 344912425949.2
hemolysin iii family proteinCTM89_15615Not AvailablePositive3449288 - 344995024022.2

Displaying genes 3041 – 3050 of 4156 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.