Photobacterium leiognathi strain ATCC 33979 CFSAN065438_114

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium leiognathi strain ATCC 33979 CFSAN065438_114 is characterized as a rod-shaped bacterium. This strain possesses flagella, indicating that it has the capability for motility, which can play a significant role in its ecological interactions and behavior in various environments. The genome of this strain is represented by a single replicon, which is a feature that can influence its genetic stability and replication processes. The accession number for this strain is PYOJ00000000.1, providing a reference for its genetic sequence and related research. In terms of ecological insights, the motility conferred by its flagella may allow Photobacterium leiognathi to navigate its environment effectively, potentially influencing its role in marine ecosystems, where it is often found. Its rod shape and flagellated nature suggest adaptations for life in aquatic habitats, where movement can be crucial for accessing nutrients, avoiding predation, or interacting with other microbial communities. Overall, these traits collectively contribute to understanding the ecological niche of Photobacterium leiognathi and its potential functions in marine microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium leiognathi
Strainstrain ATCC 33979 CFSAN065438_114

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium leiognathi strain ATCC 33979 CFSAN065438_114, whole

Gene Summary

Adenine Count

1430723 bp

Thymine Count

1425730 bp

Guanine Count

1005574 bp

Cytosine Count

1014105 bp

Genome Length

4876132 bp

Protein-coding Genes

4000 genes

Non-Coding Genes

156 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
upf0016 domain-containing proteinCTM89_15365Not AvailableNegative3396606 - 339716319945.2
ompa family lipoproteinCTM89_15370Not AvailableNegative3397460 - 339814923691.2
glycine--trna ligase subunit alphaCTM89_15375Not AvailablePositive3398440 - 339935134788.4
glycine--trna ligase subunit betaCTM89_15380Not AvailablePositive3399361 - 340143075577.7
valine--pyruvate transaminaseCTM89_15385Not AvailablePositive3401712 - 340295946077.7
dna topoisomerase (atp-hydrolyzing) subunit bCTM89_15390Not AvailableNegative3403062 - 340547989631.2
dna replication and repair protein recfCTM89_15395Not AvailableNegative3405499 - 340658140856.2
dna polymerase iii subunit betaCTM89_15400Not AvailableNegative3406584 - 340768440821.7
chromosomal replication initiator protein dnaaCTM89_15405Not AvailableNegative3407686 - 340910753514.9
50s ribosomal protein l34CTM89_15410Not AvailablePositive3409872 - 34100095267.65

Displaying genes 3001 – 3010 of 4156 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.