Photobacterium leiognathi strain ATCC 33979 CFSAN065438_114

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium leiognathi strain ATCC 33979 CFSAN065438_114 is characterized as a rod-shaped bacterium. This strain possesses flagella, indicating that it has the capability for motility, which can play a significant role in its ecological interactions and behavior in various environments. The genome of this strain is represented by a single replicon, which is a feature that can influence its genetic stability and replication processes. The accession number for this strain is PYOJ00000000.1, providing a reference for its genetic sequence and related research. In terms of ecological insights, the motility conferred by its flagella may allow Photobacterium leiognathi to navigate its environment effectively, potentially influencing its role in marine ecosystems, where it is often found. Its rod shape and flagellated nature suggest adaptations for life in aquatic habitats, where movement can be crucial for accessing nutrients, avoiding predation, or interacting with other microbial communities. Overall, these traits collectively contribute to understanding the ecological niche of Photobacterium leiognathi and its potential functions in marine microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium leiognathi
Strainstrain ATCC 33979 CFSAN065438_114

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium leiognathi strain ATCC 33979 CFSAN065438_114, whole

Gene Summary

Adenine Count

1430723 bp

Thymine Count

1425730 bp

Guanine Count

1005574 bp

Cytosine Count

1014105 bp

Genome Length

4876132 bp

Protein-coding Genes

4000 genes

Non-Coding Genes

156 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thioredoxin trxaCTM89_09140Not AvailableNegative1982872 - 198319811639.0
atp-dependent rna helicase rhlbCTM89_09145Not AvailablePositive1983312 - 198462248911.5
guanosine-5'-triphosphate,3'-diphosphate diphosphataseCTM89_09150Not AvailablePositive1984644 - 198613455118.8
porinCTM89_09155Not AvailableNegative1986461 - 198744735637.2
atp-dependent dna helicase dingCTM89_09160Not AvailablePositive1988133 - 199021178250.1
hypothetical proteinCTM89_09165Not AvailablePositive1990235 - 199100827380.2
prepilin peptidaseCTM89_09170Not AvailablePositive1991031 - 199158221605.4
histone deacetylaseCTM89_09175Not AvailablePositive1991588 - 199249633583.0
duf2496 domain-containing proteinCTM89_09180Not AvailablePositive1992510 - 19926806173.31
diguanylate phosphodiesteraseCTM89_09185Not AvailablePositive1992847 - 199439458555.5

Displaying genes 1801 – 1810 of 4156 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.