Photobacterium phosphoreum strain AK-5 CFSAN065477_180

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium phosphoreum strain AK-5 (CFSAN065477_180) is a notable microorganism primarily associated with specific food sources, particularly ground beef and steak tartare. This strain is classified as aerobic, indicating that it requires oxygen to grow and thrive. The presence of flagella suggests that it is motile, which could have implications for its interactions within its habitat. Genetically, Photobacterium phosphoreum strain AK-5 is characterized by a single replicon, as indicated by its genomic data. The accession number for this strain is PYNB00000000.1, which serves as a reference for accessing its genetic information in databases. The ecological role of Photobacterium phosphoreum in ground beef and steak tartare may involve contributing to the microbial community associated with these food products. Its aerobic nature and motility could facilitate its survival and proliferation in environments where oxygen is present, potentially impacting the overall microbial dynamics of the food matrix. Understanding the characteristics of such strains can be crucial for food safety and quality control, especially in products that are consumed raw or undercooked.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium phosphoreum
Strainstrain AK-5 CFSAN065477_180

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatground beef; steak tartare
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium phosphoreum strain AK-5 CFSAN065477_180, whole

Gene Summary

Adenine Count

1460444 bp

Thymine Count

1466066 bp

Guanine Count

950381 bp

Cytosine Count

946312 bp

Genome Length

4823203 bp

Protein-coding Genes

4255 genes

Non-Coding Genes

174 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
autonomous glycyl radical cofactor grcaC9J21_07220Not AvailableNegative1639051 - 163942813749.1
deoxyribonuclease ivC9J21_07225Not AvailablePositive1639791 - 164063931210.2
uracil-dna glycosylaseC9J21_07230Not AvailablePositive1640643 - 164130524568.4
duf3545 domain-containing proteinC9J21_07235Not AvailableNegative1641375 - 16415577325.67
sodium:alanine symporter family proteinC9J21_07240Not AvailablePositive1642073 - 164353352615.9
peroxide stress protein yaaaC9J21_07245Not AvailablePositive1643642 - 164441528883.8
atp-dependent rna helicase srmbC9J21_07250Not AvailableNegative1644504 - 164575446955.3
sam-dependent methyltransferaseC9J21_07255Not AvailableNegative1645950 - 164666025950.2
branched-chain amino acid transport system ii carrier proteinC9J21_07260Not AvailablePositive1647046 - 164836246555.9
flavodoxin fldbC9J21_07265Not AvailableNegative1648441 - 164896219875.4

Displaying genes 1461 – 1470 of 4429 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da
BASm00177315,10-MethenyltetrahydrofolateC20H22N7O6Chemical structure of 5,10-Methenyltetrahydrofolate7444-29-3
Average456.432Da
Monoisotopic456.163156471Da

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.