Photobacterium damselae strain BT-6 CFSAN065500_43

CoccusMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium damselae strain BT-6 (CFSAN065500_43) is a Gram-negative, coccus-shaped bacterium primarily found in marine environments, specifically within Italian aquaculture settings. This strain is characterized by its motility, which is facilitated by the presence of flagella, allowing it to navigate its aquatic habitat effectively. P. damselae is classified as mesophilic, indicating that it thrives within a moderate temperature range, though specific temperature limits are not provided in the data. The bacterium is notable for having a single replicon, which suggests a streamlined genomic organization. This strain is known to infect various hosts, including Homo sapiens (humans) and Alca torda (the razorbill), where it can cause soft-tissue infections. The health implications of P. damselae infections in humans underscore its significance in both aquaculture and public health contexts. The ecological role of Photobacterium damselae in marine environments is likely tied to its interactions with aquatic organisms and its potential impact on fish health in aquaculture. By understanding its pathogenic potential and ecological interactions, effective strategies could be developed to manage its presence and mitigate health risks in both marine ecosystems and human populations.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium damselae
Strainstrain BT-6 CFSAN065500_43

Profile

Physiology
Gram staining propertiesNegative
ShapeCoccus
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Photobacterium damselae strain BT-6 CFSAN065500_43
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangemesophilic
HabitatItalian aquaculture; Marine
Biotic relationshipNot Available
Host(s)Homo sapiens, Alca torda
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium damselae strain BT-6 CFSAN065500_43, whole genome

Gene Summary

Adenine Count

1317805 bp

Thymine Count

1343305 bp

Guanine Count

924455 bp

Cytosine Count

882234 bp

Genome Length

4467799 bp

Protein-coding Genes

3795 genes

Non-Coding Genes

159 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
jab domain-containing proteinCTM90_12270Not AvailablePositive2779387 - 278006124999.2
50s ribosomal protein l28CTM90_12275Not AvailablePositive2780238 - 27804749034.13
50s ribosomal protein l33CTM90_12280Not AvailablePositive2780489 - 27806566377.89
hypothetical proteinCTM90_12285Not AvailablePositive2780787 - 278126618117.3
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyaseCTM90_12290Not AvailablePositive2781291 - 278210029589.9
nad-dependent epimeraseCTM90_12295Not AvailablePositive2782236 - 278324037446.3
phosphopantetheine adenylyltransferaseCTM90_12300Not AvailableNegative2783303 - 278378517833.5
lipopolysaccharide heptosyltransferase family proteinCTM90_12305Not AvailableNegative2783805 - 278483638150.0
3-deoxy-d-manno-octulosonic acid kinaseCTM90_12310Not AvailablePositive2784928 - 278563227130.6
3-deoxy-d-manno-octulosonic acid transferaseCTM90_12315Not AvailableNegative2785629 - 278690047028.2

Displaying genes 2441 – 2450 of 3954 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Soft-tissue infectionCausesPMC8231020

Displaying health effects 1 – 1 of 1 in total