Photobacterium damselae strain BT-6 CFSAN065500_43

CoccusMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium damselae strain BT-6 (CFSAN065500_43) is a Gram-negative, coccus-shaped bacterium primarily found in marine environments, specifically within Italian aquaculture settings. This strain is characterized by its motility, which is facilitated by the presence of flagella, allowing it to navigate its aquatic habitat effectively. P. damselae is classified as mesophilic, indicating that it thrives within a moderate temperature range, though specific temperature limits are not provided in the data. The bacterium is notable for having a single replicon, which suggests a streamlined genomic organization. This strain is known to infect various hosts, including Homo sapiens (humans) and Alca torda (the razorbill), where it can cause soft-tissue infections. The health implications of P. damselae infections in humans underscore its significance in both aquaculture and public health contexts. The ecological role of Photobacterium damselae in marine environments is likely tied to its interactions with aquatic organisms and its potential impact on fish health in aquaculture. By understanding its pathogenic potential and ecological interactions, effective strategies could be developed to manage its presence and mitigate health risks in both marine ecosystems and human populations.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium damselae
Strainstrain BT-6 CFSAN065500_43

Profile

Physiology
Gram staining propertiesNegative
ShapeCoccus
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Photobacterium damselae strain BT-6 CFSAN065500_43
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangemesophilic
HabitatItalian aquaculture; Marine
Biotic relationshipNot Available
Host(s)Homo sapiens, Alca torda
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium damselae strain BT-6 CFSAN065500_43, whole genome

Gene Summary

Adenine Count

1317805 bp

Thymine Count

1343305 bp

Guanine Count

924455 bp

Cytosine Count

882234 bp

Genome Length

4467799 bp

Protein-coding Genes

3795 genes

Non-Coding Genes

159 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iv-a pilus assembly atpase pilbCTM90_09115Not AvailableNegative2080092 - 208178362473.8
prepilin-type n-terminal cleavage/methylation domain-containing proteinCTM90_09120Not AvailableNegative2081793 - 208222114478.4
1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampdCTM90_09125Not AvailablePositive2082692 - 208327021498.2
pyruvate dehydrogenase complex transcriptional repressor pdhrCTM90_09130Not AvailablePositive2083630 - 208440329661.5
pyruvate dehydrogenase (acetyl-transferring), homodimeric typeCTM90_09135Not AvailablePositive2084484 - 208714499358.0
pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferaseCTM90_09140Not AvailablePositive2087157 - 208902864787.5
dihydrolipoyl dehydrogenaseCTM90_09145Not AvailablePositive2089206 - 209063650898.8
hypothetical proteinCTM90_09150Not AvailableNegative2090720 - 209126519428.7
lruc domain-containing proteinCTM90_09155Not AvailableNegative2091278 - 209334474311.8
methyl-accepting chemotaxis proteinCTM90_09160Not AvailableNegative2093536 - 209544969575.5

Displaying genes 1821 – 1830 of 3954 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Soft-tissue infectionCausesPMC8231020

Displaying health effects 1 – 1 of 1 in total