Photobacterium damselae strain BT-6 CFSAN065500_43

CoccusMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium damselae strain BT-6 (CFSAN065500_43) is a Gram-negative, coccus-shaped bacterium primarily found in marine environments, specifically within Italian aquaculture settings. This strain is characterized by its motility, which is facilitated by the presence of flagella, allowing it to navigate its aquatic habitat effectively. P. damselae is classified as mesophilic, indicating that it thrives within a moderate temperature range, though specific temperature limits are not provided in the data. The bacterium is notable for having a single replicon, which suggests a streamlined genomic organization. This strain is known to infect various hosts, including Homo sapiens (humans) and Alca torda (the razorbill), where it can cause soft-tissue infections. The health implications of P. damselae infections in humans underscore its significance in both aquaculture and public health contexts. The ecological role of Photobacterium damselae in marine environments is likely tied to its interactions with aquatic organisms and its potential impact on fish health in aquaculture. By understanding its pathogenic potential and ecological interactions, effective strategies could be developed to manage its presence and mitigate health risks in both marine ecosystems and human populations.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium damselae
Strainstrain BT-6 CFSAN065500_43

Profile

Physiology
Gram staining propertiesNegative
ShapeCoccus
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Photobacterium damselae strain BT-6 CFSAN065500_43
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangemesophilic
HabitatItalian aquaculture; Marine
Biotic relationshipNot Available
Host(s)Homo sapiens, Alca torda
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium damselae strain BT-6 CFSAN065500_43, whole genome

Gene Summary

Adenine Count

1317805 bp

Thymine Count

1343305 bp

Guanine Count

924455 bp

Cytosine Count

882234 bp

Genome Length

4467799 bp

Protein-coding Genes

3795 genes

Non-Coding Genes

159 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ycik family oxidoreductaseCTM90_04885Not AvailablePositive1161974 - 116273527219.8
23s rrna pseudouridine(2605) synthase rlubCTM90_04890Not AvailableNegative1162819 - 116397643946.0
threonylcarbamoyl-amp synthaseCTM90_04895Not AvailableNegative1164336 - 116495923236.9
php domain-containing proteinCTM90_04900Not AvailableNegative1164979 - 116584832557.9
3-deoxy-7-phosphoheptulonate synthaseCTM90_04905Not AvailablePositive1166144 - 116715736547.6
anthranilate synthase component 1CTM90_04910Not AvailablePositive1167157 - 116881561190.4
aminodeoxychorismate/anthranilate synthase component iiCTM90_04915Not AvailablePositive1168808 - 116943722630.3
anthranilate phosphoribosyltransferaseCTM90_04920Not AvailablePositive1169442 - 117044935594.8
bifunctional indole-3-glycerol-phosphate synthase trpc/phosphoribosylanthranilate isomerase trpfCTM90_04925Not AvailablePositive1170459 - 117186852370.8
tryptophan synthase subunit betaCTM90_04930Not AvailablePositive1171861 - 117305142629.3

Displaying genes 991 – 1000 of 3954 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Soft-tissue infectionCausesPMC8231020

Displaying health effects 1 – 1 of 1 in total