Photobacterium aquimaris strain BS2 CFSAN065502_83

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium aquimaris strain BS2, designated with the accession number PYMK00000000.1, is an aerobic bacterium characterized by its requirement for oxygen to support metabolic processes. This organism possesses flagella, indicating motility, which can be advantageous for navigating its aquatic environment. Additionally, Photobacterium aquimaris strain BS2 has a single replicon, which refers to the structure of its genetic material, typically characteristic of its chromosomal configuration. The presence of a single replicon may suggest a streamlined genomic architecture, which can influence the efficiency of cellular processes and adaptability to environmental conditions. Ecologically, this strain of Photobacterium is likely to inhabit marine environments, given the genus's association with oceanic ecosystems. Its aerobic nature and motility through flagella suggest that it may play a role in the microbial dynamics of these habitats, potentially contributing to nutrient cycling and the degradation of organic matter within its ecosystem. The ability to move towards oxygen-rich areas could enhance its survival and functional roles in aquatic microbiomes. Understanding such traits helps to elucidate the ecological significance of Photobacterium aquimaris strain BS2 in marine settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium aquimaris
Strainstrain BS2 CFSAN065502_83

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium aquimaris strain BS2 CFSAN065502_83, whole genome

Gene Summary

Adenine Count

1405728 bp

Thymine Count

1408889 bp

Guanine Count

926592 bp

Cytosine Count

931333 bp

Genome Length

4672542 bp

Protein-coding Genes

3990 genes

Non-Coding Genes

166 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase cmobCTM88_00050Not AvailableNegative11719 - 1269337614.2
carboxy-s-adenosyl-l-methionine synthase cmoaCTM88_00055Not AvailableNegative12710 - 1343827321.7
duf72 domain-containing proteinCTM88_00060Not AvailableNegative13612 - 1450833936.9
aspartate--trna ligaseCTM88_00065Not AvailablePositive14836 - 1662066497.6
yebc/pmpr family dna-binding transcriptional regulatorCTM88_00070Not AvailablePositive16819 - 1756526301.6
crossover junction endodeoxyribonuclease ruvcCTM88_00075Not AvailablePositive17586 - 1810718235.3
holliday junction branch migration protein ruvaCTM88_00080Not AvailablePositive18303 - 1892622539.5
holliday junction branch migration dna helicase ruvbCTM88_00085Not AvailablePositive18954 - 1997037717.4
cytochrome bd-i ubiquinol oxidase subunit cydaCTM88_00090Not AvailablePositive20977 - 2256358817.1
cytochrome d ubiquinol oxidase subunit iiCTM88_00095Not AvailablePositive22582 - 2371841748.6

Displaying genes 41 – 50 of 4156 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.