Photobacterium aquimaris strain DSM 23343 CFSAN065518_113

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium aquimaris strain DSM 23343, also designated as CFSAN065518_113, is an aerobic bacterium characterized by the presence of flagella, which suggests a motile lifestyle. This strain features a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in various environments. As an aerobic organism, Photobacterium aquimaris relies on oxygen for its metabolic processes, which aligns with its habitat in aquatic environments. The presence of flagella allows for active movement, likely aiding in the search for nutrients or optimal living conditions within its ecological niche. The strain is cataloged under the accession number PYLY00000000.1, which provides a reference for genetic and genomic studies related to this organism. Understanding the genetic framework of Photobacterium aquimaris could yield insights into its metabolic capabilities and ecological interactions. Biologically, the motility conferred by flagella and the aerobic nature of this strain suggest that it may play a significant role in nutrient cycling within marine ecosystems. Its ability to thrive in oxygen-rich environments may also indicate potential interactions with other microbial communities, highlighting its ecological importance in aquatic habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium aquimaris
Strainstrain DSM 23343 CFSAN065518_113

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium aquimaris strain DSM 23343 CFSAN065518_113, whole

Gene Summary

Adenine Count

1355865 bp

Thymine Count

1353102 bp

Guanine Count

879156 bp

Cytosine Count

877233 bp

Genome Length

4465356 bp

Protein-coding Genes

3861 genes

Non-Coding Genes

156 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
diaminopimelate decarboxylaseC0W81_08720Not AvailablePositive1930500 - 193175045796.9
diaminopimelate epimeraseC0W81_08725Not AvailablePositive1931790 - 193262030206.2
tyrosine recombinase xercC0W81_08730Not AvailablePositive1932660 - 193358034884.0
5-amino-6-(5-phospho-d-ribitylamino)uracil phosphatase yigbC0W81_08735Not AvailablePositive1933613 - 193434127088.6
doxx family proteinC0W81_08740Not AvailableNegative1934363 - 193482117647.8
duf2063 domain-containing proteinC0W81_08745Not AvailableNegative1934814 - 193561730279.9
duf692 domain-containing proteinC0W81_08750Not AvailableNegative1935592 - 193648533568.9
duf2282 domain-containing proteinC0W81_08755Not AvailableNegative1936460 - 19367359255.33
dna helicase iiC0W81_08760Not AvailablePositive1936980 - 193915182369.8
gamma-glutamyltransferaseC0W81_08765Not AvailableNegative1939220 - 194098664137.8

Displaying genes 1751 – 1760 of 4017 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.