Limimaricola soesokkakensis strain DSM 29956

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Limimaricola

Description

Limimaricola soesokkakensis strain DSM 29956 is a Gram-negative, rod-shaped bacterium. This strain is characterized by having a single replicon, which is indicative of its genomic structure. The sequence data for this strain can be accessed under the accession number PYGB00000000.1. As a member of the Limimaricola genus, this bacterium may play a role in specific ecological niches, particularly in aquatic environments where members of this genus are often found. The Gram-negative classification suggests that it possesses an outer membrane, which may influence its interactions with other microorganisms and its resilience to environmental stresses. The rod shape of Limimaricola soesokkakensis could also suggest potential motility characteristics, aiding in its adaptation to various habitats. Understanding the traits of Limimaricola soesokkakensis can contribute to insights into its ecological role, particularly in nutrient cycling and interactions within microbial communities. Its presence in specific environments may indicate its adaptation strategies and functional capabilities, making it a subject of interest for further research in microbiology and ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusLimimaricola
SpeciesLimimaricola soesokkakensis
Strainstrain DSM 29956

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Limimaricola soesokkakensis strain DSM 29956 Ga0180984_140, whole

Gene Summary

Adenine Count

629284 bp

Thymine Count

630096 bp

Guanine Count

1284212 bp

Cytosine Count

1287394 bp

Genome Length

3830986 bp

Protein-coding Genes

3606 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
branched-chain amino acid aminotransferaseCLV79_108122Not AvailableNegative2508593 - 250945630818.7
catechol 2,3-dioxygenaseCLV79_108123Not AvailableNegative2509553 - 251003817375.5
l,d-transpeptidase-like proteinCLV79_108124Not AvailablePositive2510225 - 251077619749.6
tryptophanyl-trna synthetaseCLV79_108125Not AvailableNegative2511017 - 251203337235.6
membrane associated rhomboid family serine proteaseCLV79_108126Not AvailablePositive2512113 - 251282624918.1
putative peptidoglycan lipid ii flippaseCLV79_108127Not AvailableNegative2512823 - 251440956145.1
utp--glnb (protein pii) uridylyltransferase glndCLV79_108128Not AvailableNegative2514406 - 2517225105817.0
amino acid/amide abc transporter substrate-binding protein (haat family)CLV79_108129Not AvailableNegative2517185 - 251837540342.2
16s rrna (cytidine1402-2'-o)-methyltransferaseCLV79_108130Not AvailablePositive2518443 - 251933031275.6
putative endonucleaseCLV79_108131Not AvailablePositive2519532 - 251991514008.7

Displaying genes 2461 – 2470 of 3673 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.