Limimaricola soesokkakensis strain DSM 29956

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Limimaricola

Description

Limimaricola soesokkakensis strain DSM 29956 is a Gram-negative, rod-shaped bacterium. This strain is characterized by having a single replicon, which is indicative of its genomic structure. The sequence data for this strain can be accessed under the accession number PYGB00000000.1. As a member of the Limimaricola genus, this bacterium may play a role in specific ecological niches, particularly in aquatic environments where members of this genus are often found. The Gram-negative classification suggests that it possesses an outer membrane, which may influence its interactions with other microorganisms and its resilience to environmental stresses. The rod shape of Limimaricola soesokkakensis could also suggest potential motility characteristics, aiding in its adaptation to various habitats. Understanding the traits of Limimaricola soesokkakensis can contribute to insights into its ecological role, particularly in nutrient cycling and interactions within microbial communities. Its presence in specific environments may indicate its adaptation strategies and functional capabilities, making it a subject of interest for further research in microbiology and ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusLimimaricola
SpeciesLimimaricola soesokkakensis
Strainstrain DSM 29956

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Limimaricola soesokkakensis strain DSM 29956 Ga0180984_140, whole

Gene Summary

Adenine Count

629284 bp

Thymine Count

630096 bp

Guanine Count

1284212 bp

Cytosine Count

1287394 bp

Genome Length

3830986 bp

Protein-coding Genes

3606 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
homogentisate 1,2-dioxygenaseCLV79_10521Not AvailableNegative1786938 - 178830551186.4
dna-binding marr family transcriptional regulatorCLV79_10522Not AvailablePositive1788454 - 178889716528.9
hypothetical proteinCLV79_10523Not AvailablePositive1788968 - 178934213569.0
d-xylose isomeraseCLV79_10524Not AvailableNegative1789520 - 179082148689.0
laci family transcriptional regulatorCLV79_10525Not AvailableNegative1790939 - 179196737533.3
xylulokinaseCLV79_10526Not AvailableNegative1792090 - 179353850730.3
gntr family transcriptional regulatorCLV79_10527Not AvailablePositive1794021 - 179480028934.6
carbohydrate abc transporter substrate-binding protein (cut1 family)CLV79_10528Not AvailablePositive1794939 - 179648658908.8
putative dehydrogenaseCLV79_10529Not AvailablePositive1796625 - 179775241584.9
d-mannonate dehydrataseCLV79_10530Not AvailablePositive1797918 - 179914445918.1

Displaying genes 1761 – 1770 of 3673 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.