Variovorax sp. WS11

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. WS11 is a rod-shaped bacteria primarily found in the phyllosphere, which refers to the surface of leaves and stems of plants. This habitat indicates a potential role in plant-associated microbial communities, where it may interact with plant surfaces and possibly influence plant health or nutrient dynamics. The strain possesses a single replicon, suggesting a simpler genomic organization compared to some other bacteria that may have multiple replicons. This characteristic can impact its replication and evolutionary strategies, potentially allowing for a more streamlined adaptation to its specific ecological niche. The accession number for Variovorax sp. WS11 is PXZZ00000000.1, which provides a reference point for further genomic and taxonomic studies. This identifier can facilitate the retrieval of genetic and biochemical data pertinent to this strain, aiding in the understanding of its biological functions and ecological roles. In summary, the traits of Variovorax sp. WS11 highlight its specialization as a leaf-associated bacterium with a simple genetic structure. Its habitat in the phyllosphere may suggest important interactions with plant life, potentially contributing to the microbiome's diversity and functionality in terrestrial ecosystems. Understanding such organisms is essential for comprehending their roles in nutrient cycling and plant health in agricultural and natural environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. WS11
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatphyllosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. WS11 Contig569, whole genome shotgun sequence.

Gene Summary

Adenine Count

1407404 bp

Thymine Count

1398856 bp

Guanine Count

2882315 bp

Cytosine Count

2873493 bp

Genome Length

8562068 bp

Protein-coding Genes

8142 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
marr family transcriptional regulatorC7T35_38785Not AvailablePositive8044776 - 804521316194.5
fad-binding oxidoreductaseC7T35_38790Not AvailableNegative8045241 - 8048285109569.0
gntr family transcriptional regulatorC7T35_38795Not AvailableNegative8048285 - 804898025829.4
serine--glyoxylate aminotransferaseC7T35_38800Not AvailablePositive8049104 - 80492565536.84
alpha/beta hydrolaseC7T35_38810Not AvailableNegative8049859 - 805062327232.5
carboxymuconolactone decarboxylaseC7T35_38815Not AvailableNegative8050620 - 805105716172.4
3-carboxy-cis,cis-muconate cycloisomeraseC7T35_38820Not AvailableNegative8051054 - 805226542333.1
shikimate dehydrogenaseC7T35_38825Not AvailableNegative8052274 - 805311329606.8
oxidoreductaseC7T35_38830Not AvailableNegative8053110 - 805415036717.1
abc transporter substrate-binding proteinC7T35_38835Not AvailableNegative8054181 - 805518536040.4

Displaying genes 7551 – 7560 of 8239 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.