Variovorax sp. WS11

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. WS11 is a rod-shaped bacteria primarily found in the phyllosphere, which refers to the surface of leaves and stems of plants. This habitat indicates a potential role in plant-associated microbial communities, where it may interact with plant surfaces and possibly influence plant health or nutrient dynamics. The strain possesses a single replicon, suggesting a simpler genomic organization compared to some other bacteria that may have multiple replicons. This characteristic can impact its replication and evolutionary strategies, potentially allowing for a more streamlined adaptation to its specific ecological niche. The accession number for Variovorax sp. WS11 is PXZZ00000000.1, which provides a reference point for further genomic and taxonomic studies. This identifier can facilitate the retrieval of genetic and biochemical data pertinent to this strain, aiding in the understanding of its biological functions and ecological roles. In summary, the traits of Variovorax sp. WS11 highlight its specialization as a leaf-associated bacterium with a simple genetic structure. Its habitat in the phyllosphere may suggest important interactions with plant life, potentially contributing to the microbiome's diversity and functionality in terrestrial ecosystems. Understanding such organisms is essential for comprehending their roles in nutrient cycling and plant health in agricultural and natural environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. WS11
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatphyllosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. WS11 Contig569, whole genome shotgun sequence.

Gene Summary

Adenine Count

1407404 bp

Thymine Count

1398856 bp

Guanine Count

2882315 bp

Cytosine Count

2873493 bp

Genome Length

8562068 bp

Protein-coding Genes

8142 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
smc-scp complex subunit scpbC7T35_22560Not AvailablePositive4680791 - 468169032736.0
23s rrna pseudouridylate synthase bC7T35_22565Not AvailablePositive4681687 - 468346263336.9
nucleoside-diphosphate kinaseC7T35_22570Not AvailablePositive4683613 - 468403215020.2
23s rrna (adenine(2503)-c(2))-methyltransferase rlmnC7T35_22575Not AvailablePositive4684054 - 468520242164.8
type iv pilus biogenesis/stability protein pilwC7T35_22580Not AvailablePositive4685207 - 468603730208.7
duf4115 domain-containing proteinC7T35_22585Not AvailablePositive4686030 - 468695331170.7
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthaseC7T35_22590Not AvailablePositive4686968 - 468824545712.9
histidine--trna ligaseC7T35_22595Not AvailablePositive4688258 - 468956847737.1
hypothetical proteinC7T35_22600Not AvailablePositive4689575 - 469026425179.6
outer membrane protein assembly factor bambC7T35_22605Not AvailablePositive4690261 - 469140639782.3

Displaying genes 4431 – 4440 of 8239 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.