Variovorax sp. WS11

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. WS11 is a rod-shaped bacteria primarily found in the phyllosphere, which refers to the surface of leaves and stems of plants. This habitat indicates a potential role in plant-associated microbial communities, where it may interact with plant surfaces and possibly influence plant health or nutrient dynamics. The strain possesses a single replicon, suggesting a simpler genomic organization compared to some other bacteria that may have multiple replicons. This characteristic can impact its replication and evolutionary strategies, potentially allowing for a more streamlined adaptation to its specific ecological niche. The accession number for Variovorax sp. WS11 is PXZZ00000000.1, which provides a reference point for further genomic and taxonomic studies. This identifier can facilitate the retrieval of genetic and biochemical data pertinent to this strain, aiding in the understanding of its biological functions and ecological roles. In summary, the traits of Variovorax sp. WS11 highlight its specialization as a leaf-associated bacterium with a simple genetic structure. Its habitat in the phyllosphere may suggest important interactions with plant life, potentially contributing to the microbiome's diversity and functionality in terrestrial ecosystems. Understanding such organisms is essential for comprehending their roles in nutrient cycling and plant health in agricultural and natural environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. WS11
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatphyllosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. WS11 Contig569, whole genome shotgun sequence.

Gene Summary

Adenine Count

1407404 bp

Thymine Count

1398856 bp

Guanine Count

2882315 bp

Cytosine Count

2873493 bp

Genome Length

8562068 bp

Protein-coding Genes

8142 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
murein l,d-transpeptidaseC7T35_16095Not AvailableNegative3283331 - 328440737612.4
hypothetical proteinC7T35_16100Not AvailablePositive3284598 - 328494212429.3
amp-dependent synthetaseC7T35_16110Not AvailablePositive3285684 - 328718953053.1
high-affinity branched-chain amino acid abc transporter atp-binding protein livgC7T35_16115Not AvailablePositive3287200 - 328802729729.3
abc transporter atp-binding proteinC7T35_16120Not AvailablePositive3288024 - 328874926129.7
branched-chain amino acid abc transporter permeaseC7T35_16125Not AvailablePositive3288746 - 328961530115.1
branched-chain amino acid abc transporter permeaseC7T35_16130Not AvailablePositive3289617 - 329056732959.9
branched-chain amino acid abc transporter substrate-binding proteinC7T35_16135Not AvailablePositive3290564 - 329176644104.8
nitronate monooxygenaseC7T35_16140Not AvailablePositive3291780 - 329273933907.7
hypothetical proteinC7T35_16145Not AvailablePositive3292782 - 329494775790.6

Displaying genes 3171 – 3180 of 8239 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.