Variovorax sp. WS11

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. WS11 is a rod-shaped bacteria primarily found in the phyllosphere, which refers to the surface of leaves and stems of plants. This habitat indicates a potential role in plant-associated microbial communities, where it may interact with plant surfaces and possibly influence plant health or nutrient dynamics. The strain possesses a single replicon, suggesting a simpler genomic organization compared to some other bacteria that may have multiple replicons. This characteristic can impact its replication and evolutionary strategies, potentially allowing for a more streamlined adaptation to its specific ecological niche. The accession number for Variovorax sp. WS11 is PXZZ00000000.1, which provides a reference point for further genomic and taxonomic studies. This identifier can facilitate the retrieval of genetic and biochemical data pertinent to this strain, aiding in the understanding of its biological functions and ecological roles. In summary, the traits of Variovorax sp. WS11 highlight its specialization as a leaf-associated bacterium with a simple genetic structure. Its habitat in the phyllosphere may suggest important interactions with plant life, potentially contributing to the microbiome's diversity and functionality in terrestrial ecosystems. Understanding such organisms is essential for comprehending their roles in nutrient cycling and plant health in agricultural and natural environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. WS11
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatphyllosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. WS11 Contig569, whole genome shotgun sequence.

Gene Summary

Adenine Count

1407404 bp

Thymine Count

1398856 bp

Guanine Count

2882315 bp

Cytosine Count

2873493 bp

Genome Length

8562068 bp

Protein-coding Genes

8142 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
carboxymuconolactone decarboxylaseC7T35_12425Not AvailableNegative2573970 - 257454221019.4
lysr family transcriptional regulatorC7T35_12430Not AvailableNegative2574688 - 257568035989.0
methyltransferaseC7T35_12435Not AvailablePositive2575805 - 257646422826.5
aspartate aminotransferaseC7T35_12440Not AvailablePositive2576492 - 257769442232.1
cysteine abc transporter substrate-binding proteinC7T35_12445Not AvailablePositive2577721 - 257856030100.4
abc transporter permeaseC7T35_12450Not AvailablePositive2578569 - 257926725082.2
amino acid abc transporter permeaseC7T35_12455Not AvailablePositive2579270 - 258000726739.6
amino acid abc transporter atp-binding proteinC7T35_12460Not AvailablePositive2580004 - 258072926468.9
vapc toxin family pin domain ribonucleaseC7T35_12465Not AvailableNegative2580858 - 258126215020.0
abrb/maze/spovt family dna-binding domain-containing proteinC7T35_12470Not AvailableNegative2581263 - 25814938701.31

Displaying genes 2471 – 2480 of 8239 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.