Variovorax sp. WS11

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. WS11 is a rod-shaped bacteria primarily found in the phyllosphere, which refers to the surface of leaves and stems of plants. This habitat indicates a potential role in plant-associated microbial communities, where it may interact with plant surfaces and possibly influence plant health or nutrient dynamics. The strain possesses a single replicon, suggesting a simpler genomic organization compared to some other bacteria that may have multiple replicons. This characteristic can impact its replication and evolutionary strategies, potentially allowing for a more streamlined adaptation to its specific ecological niche. The accession number for Variovorax sp. WS11 is PXZZ00000000.1, which provides a reference point for further genomic and taxonomic studies. This identifier can facilitate the retrieval of genetic and biochemical data pertinent to this strain, aiding in the understanding of its biological functions and ecological roles. In summary, the traits of Variovorax sp. WS11 highlight its specialization as a leaf-associated bacterium with a simple genetic structure. Its habitat in the phyllosphere may suggest important interactions with plant life, potentially contributing to the microbiome's diversity and functionality in terrestrial ecosystems. Understanding such organisms is essential for comprehending their roles in nutrient cycling and plant health in agricultural and natural environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. WS11
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatphyllosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. WS11 Contig569, whole genome shotgun sequence.

Gene Summary

Adenine Count

1407404 bp

Thymine Count

1398856 bp

Guanine Count

2882315 bp

Cytosine Count

2873493 bp

Genome Length

8562068 bp

Protein-coding Genes

8142 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5-formyltetrahydrofolate cyclo-ligaseC7T35_05285Not AvailableNegative1087152 - 108776922961.6
lytic transglycosylaseC7T35_05290Not AvailablePositive1087779 - 108980073980.2
methyltransferaseC7T35_05295Not AvailablePositive1089800 - 109035719311.7
glutathione s-transferaseC7T35_05300Not AvailablePositive1090448 - 109113125463.1
multifunctional cca addition/repair proteinC7T35_05305Not AvailablePositive1091174 - 109245146916.6
trehalose-phosphataseC7T35_05310Not AvailablePositive1092501 - 109326227258.9
glucoamylaseC7T35_05315Not AvailablePositive1093259 - 109520572283.7
alpha,alpha-trehalose-phosphate synthase (udp-forming)C7T35_05320Not AvailablePositive1095228 - 109661352403.9
hypothetical proteinC7T35_05325Not AvailableNegative1096610 - 109692711303.6
lysr family transcriptional regulatorC7T35_05335Not AvailableNegative1098550 - 109944632960.0

Displaying genes 1071 – 1080 of 8239 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.