Donghicola tyrosinivorans strain DSM 100212

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Donghicola

Description

Donghicola tyrosinivorans strain DSM 100212 is a notable bacterial strain characterized by having a single replicon, which is a significant trait for understanding its genetic stability and replication processes. The strain is cataloged under the accession number PVTQ00000000.1, which provides a reference for researchers seeking to access its genomic data. As a member of the Donghicola genus, D. tyrosinivorans contributes to the exploration of microbial diversity and functionality in various environments. This strain's unique metabolic capabilities could be of interest in biotechnological applications, particularly in bioremediation processes, where the breakdown of complex compounds is crucial. The presence of a single replicon may suggest a streamlined genetic organization, potentially allowing for efficient replication and expression of genes relevant to its ecological roles. This characteristic can influence the strain's adaptability to environmental stressors and its ecological interactions. In summary, Donghicola tyrosinivorans strain DSM 100212, with its single replicon and documented genomic data, presents valuable opportunities for further research into its metabolic pathways and ecological significance. Understanding its genetic traits could provide insights into its role in nutrient cycling and microbial community dynamics in its natural habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusDonghicola
SpeciesDonghicola tyrosinivorans
Strainstrain DSM 100212

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Donghicola tyrosinivorans strain DSM 100212 Ga0181042_161, whole

Gene Summary

Adenine Count

935757 bp

Thymine Count

958512 bp

Guanine Count

1420453 bp

Cytosine Count

1372799 bp

Genome Length

4687719 bp

Protein-coding Genes

4462 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
xylulokinase/hypothetical proteinCLV74_12027Not AvailableNegative4052321 - 405380853545.6
glucose-6-phosphate isomeraseCLV74_12028Not AvailablePositive4054089 - 405470922436.6
2-dehydro-3-deoxyphosphogluconate aldolase/(4s)-4-hydroxy-2-oxoglutarate aldolaseCLV74_12029Not AvailablePositive4054720 - 405536722314.9
shikimate 5-dehydrogenaseCLV74_12030Not AvailablePositive4055364 - 405632934952.6
d-3-phosphoglycerate dehydrogenase/hypothetical proteinCLV74_12031Not AvailablePositive4056329 - 405726131816.4
l-ascorbate metabolism protein ulag (beta-lactamase superfamily)CLV74_12032Not AvailablePositive4057251 - 405806929805.0
rpir family carbohydrate utilization transcriptional regulatorCLV74_12033Not AvailablePositive4058081 - 405895031021.2
ribose transport system substrate-binding proteinCLV74_12034Not AvailablePositive4059138 - 406010033114.1
ribose transport system atp-binding proteinCLV74_12035Not AvailablePositive4060170 - 406166053046.6
ribose transport system permease proteinCLV74_12036Not AvailablePositive4061670 - 406265933498.2

Displaying genes 3901 – 3910 of 4533 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.