Bacillus atrophaeus strain LSSC3

Gram-positiveRodMotileAerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Bacillaceae

Genus

Bacillus

Description

Bacillus atrophaeus strain LSSC3 is a Gram-positive, rod-shaped bacterium that thrives in soil habitats. This organism is classified as an aerobe, indicating that it requires oxygen for its metabolic processes. A notable feature of Bacillus atrophaeus LSSC3 is its capability for mobility, which is facilitated by the presence of flagella. This strain exhibits mesophilic characteristics, meaning it thrives within a moderate temperature range, optimal for many soil-dwelling microorganisms. Bacillus atrophaeus LSSC3 is also a sporulating bacterium, allowing it to form spores as a means of survival in adverse conditions. The organism has a single replicon and one membrane, which aligns with the typical structure of many bacteria within the Bacillus genus. Bacillus atrophaeus LSSC3 is free-living, suggesting that it does not rely on a host organism for survival. This ecological trait allows it to play a role in soil ecosystems, potentially contributing to nutrient cycling and the degradation of organic materials. The presence of this strain in soil ecosystems highlights the importance of such microorganisms in maintaining soil health and fertility. The accession number for this strain is PVQO00000000.1, which can be used for further investigation into its genetic and functional characteristics. Overall, Bacillus atrophaeus strain LSSC3 exemplifies the diversity and ecological significance of soil-dwelling bacteria.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyBacillaceae
GenusBacillus
SpeciesBacillus atrophaeus
Strainstrain LSSC3

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Bacillus atrophaeus strain LSSC3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationSporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacillus atrophaeus strain LSSC3 NODE_18_length_1287_cov_273.766,

Gene Summary

Adenine Count

1192330 bp

Thymine Count

1145478 bp

Guanine Count

913699 bp

Cytosine Count

871616 bp

Genome Length

4123307 bp

Protein-coding Genes

3825 genes

Non-Coding Genes

167 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxal 5'-phosphate synthase lyase subunit pdxsC6W24_20675Not AvailablePositive4095670 - 409655431572.3
pyridoxal 5'-phosphate synthase glutaminase subunit pdxtC6W24_20680Not AvailablePositive4096576 - 409716621362.8
serine--trna ligaseC6W24_20685Not AvailablePositive4097491 - 409876848791.0
Trna-serNot AvailableNot AvailablePositive4098981 - 4099073Not Available
deoxynucleoside kinaseC6W24_20695Not AvailableNegative4099184 - 409983725557.4
deoxynucleoside kinaseC6W24_20700Not AvailableNegative4099834 - 410045724284.3
spore gernimation proteinC6W24_20705Not AvailableNegative4100555 - 410183548221.1
cysteine hydrolaseC6W24_20710Not AvailableNegative4101909 - 410245720779.8
nucleoside deaminaseC6W24_20715Not AvailablePositive4102538 - 410302317934.7
dna polymerase iii subunit gamma/tauC6W24_20725Not AvailablePositive4103502 - 410519662915.6

Displaying genes 3971 – 3980 of 3992 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

308 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da

Displaying 1–10 of 308 metabolites

Health Effects

No health effects information available for this bacterium.