Escherichia coli strain B29595

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain B29595 is a gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe, capable of thriving in both oxygen-rich and oxygen-poor environments. This strain is motile, possessing flagella, and typically exists in pairs or singles. It is mesophilic, with an optimal growth temperature of 37°C. B29595 is predominantly host-associated, engaging in a free-living biotic relationship with a diverse array of hosts, including various species of mammals (e.g., Homo sapiens, Bos taurus, Canis lupus familiaris) and birds (e.g., Gallus gallus, Meleagris gallopavo). It also interacts with plants like Solanum lycopersicum and Brassica oleracea var. italica, indicating its ecological versatility. The strain is notably pathogenic to humans, being linked to numerous health complications such as urinary tract infections (UTIs), gastrointestinal infections, and more severe conditions like neonatal meningitis and hemolytic uremic syndrome (HUS). These health effects underscore the importance of E. coli B29595 in clinical settings, particularly regarding its role in foodborne illnesses and its potential to cause severe systemic diseases. Given its diverse host interactions and significant health implications, E. coli strain B29595 serves as a critical model for studying microbial pathogenesis and host-pathogen dynamics. This strain exemplifies the complexity of microbial ecology and the potential for pathogenic bacteria to impact both human health and agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain B29595

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain B29595
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain B29595

Gene Summary

Adenine Count

1370124 bp

Thymine Count

1366870 bp

Guanine Count

1450157 bp

Cytosine Count

1461919 bp

Genome Length

5649070 bp

Protein-coding Genes

5058 genes

Non-Coding Genes

348 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxal kinase pdxyC6985_09435Not AvailableNegative1918354 - 191921431070.6
tyrosine--trna ligaseC6985_09440Not AvailableNegative1919278 - 192055247389.3
pyridoxamine 5'-phosphate oxidaseC6985_09445Not AvailableNegative1920679 - 192133525422.4
lysozyme inhibitorC6985_09450Not AvailableNegative1921395 - 192172412531.2
anhydro-n-acetylmuramic acid kinaseC6985_09455Not AvailableNegative1921812 - 192293340067.4
outer membrane lipoprotein slybC6985_09460Not AvailablePositive1923208 - 192367515513.7
transcriptional regulator slyaC6985_09465Not AvailableNegative1923723 - 192416316571.3
duf1656 domain-containing proteinC6985_09470Not AvailablePositive1924356 - 19245929005.54
hlyd family secretion proteinC6985_09475Not AvailablePositive1924559 - 192545833136.6
fusc family proteinC6985_09480Not AvailablePositive1925455 - 192747075463.5

Displaying genes 2011 – 2020 of 5406 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total