Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain XJ_F8_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1523103 bp
Thymine Count
1527238 bp
Guanine Count
1556544 bp
Cytosine Count
1557252 bp
Genome Length
6164137 bp
Protein-coding Genes
7060 genes
Non-Coding Genes
408 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydrogenase 3 membrane subunit | C5P43_29895 | Not Available | Negative | 5221548 - 5221813 | 9629.18 |
| formate hydrogenlyase subunit 3 | C5P43_29900 | Not Available | Negative | 5221816 - 5222873 | 37170.3 |
| [ni/fe] hydrogenase small subunit | C5P43_29905 | Not Available | Positive | 5222874 - 5223451 | 21054.9 |
| hydrogenase 1 large subunit | C5P43_29910 | Not Available | Positive | 5223448 - 5224192 | 27744.3 |
| trna cytosine(34) acetyltransferase tmca | C5P43_29915 | Not Available | Negative | 5224193 - 5225501 | 48042.2 |
| trna cytosine(34) acetyltransferase tmca | C5P43_29920 | Not Available | Negative | 5225510 - 5226818 | 48086.1 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | C5P43_29925 | Not Available | Negative | 5226948 - 5228143 | 44750.2 |
| phosphonate abc transporter permease | C5P43_29930 | Not Available | Negative | 5228144 - 5228519 | 13984.3 |
| hypothetical protein | C5P43_29935 | Not Available | Positive | 5228522 - 5228722 | 7164.68 |
| phosphonate abc transporter substrate-binding protein | C5P43_29940 | Not Available | Negative | 5228644 - 5229458 | 29819.4 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





