Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain XJ_F8_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1523103 bp
Thymine Count
1527238 bp
Guanine Count
1556544 bp
Cytosine Count
1557252 bp
Genome Length
6164137 bp
Protein-coding Genes
7060 genes
Non-Coding Genes
408 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydrogenase isoenzymes nickel incorporation protein hypb | C5P43_25860 | Not Available | Negative | 4616834 - 4617706 | 31566.8 |
| protein hypa | C5P43_25865 | Not Available | Negative | 4617710 - 4618060 | 13168.9 |
| formate hydrogenlyase regulatory protein hyca | C5P43_25870 | Not Available | Positive | 4618272 - 4618733 | 17627.9 |
| formate hydrogenlyase | C5P43_25875 | Not Available | Positive | 4618858 - 4619294 | 15416.8 |
| hypothetical protein | C5P43_25880 | Not Available | Positive | 4619295 - 4619412 | 4265.08 |
| hypothetical protein | C5P43_25885 | Not Available | Negative | 4619468 - 4619830 | 13812.1 |
| hypothetical protein | C5P43_25890 | Not Available | Negative | 4619866 - 4620801 | 33739.5 |
| lema family protein | C5P43_25895 | Not Available | Negative | 4620785 - 4621387 | 22615.8 |
| 7-carboxy-7-deazaguanine synthase quee | C5P43_25900 | Not Available | Positive | 4621560 - 4622209 | 24193.0 |
| duf159 family protein | C5P43_25905 | Not Available | Negative | 4622210 - 4622853 | 24243.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





