Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain XJ_F8_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1523103 bp
Thymine Count
1527238 bp
Guanine Count
1556544 bp
Cytosine Count
1557252 bp
Genome Length
6164137 bp
Protein-coding Genes
7060 genes
Non-Coding Genes
408 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-asn | Not Available | Not Available | Positive | 4227260 - 4227335 | Not Available |
| dgsa anti-repressor mtfa | C5P43_23550 | Not Available | Negative | 4227436 - 4228233 | 30306.8 |
| Trna-ser | Not Available | Not Available | Positive | 4228327 - 4228416 | Not Available |
| hypothetical protein | C5P43_23560 | Not Available | Negative | 4228721 - 4228963 | 9051.22 |
| cytochrome b561 | C5P43_23565 | Not Available | Negative | 4228986 - 4229516 | 20338.4 |
| metal-binding protein zint | C5P43_23570 | Not Available | Negative | 4229859 - 4230278 | 16381.1 |
| type iv secretion protein rhs | C5P43_23575 | Not Available | Positive | 4230279 - 4233999 | 140146.0 |
| hypothetical protein | C5P43_23580 | Not Available | Positive | 4234011 - 4234460 | 16860.9 |
| type vi secretion system tip protein vgrg | C5P43_23585 | Not Available | Positive | 4234705 - 4236050 | 49944.5 |
| duf1795 domain-containing protein | C5P43_23590 | Not Available | Positive | 4236078 - 4236539 | 17319.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





