Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain XJ_F8_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1523103 bp
Thymine Count
1527238 bp
Guanine Count
1556544 bp
Cytosine Count
1557252 bp
Genome Length
6164137 bp
Protein-coding Genes
7060 genes
Non-Coding Genes
408 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional biotin--[acetyl-coa-carboxylase] ligase/biotin operon repressor bira | C5P43_23345 | Not Available | Negative | 4191734 - 4192699 | 35301.1 |
| udp-n-acetylmuramate dehydrogenase | C5P43_23350 | Not Available | Negative | 4192696 - 4193724 | 37827.2 |
| hypothetical protein | C5P43_23360 | Not Available | Positive | 4194191 - 4194400 | 7850.46 |
| terminase small subunit | C5P43_23365 | Not Available | Positive | 4194404 - 4195498 | 40935.3 |
| terminase | C5P43_23370 | Not Available | Positive | 4195479 - 4196780 | 49008.7 |
| duf4055 domain-containing protein | C5P43_23375 | Not Available | Positive | 4196783 - 4198189 | 53056.6 |
| malate/lactate/ureidoglycolate dehydrogenase | C5P43_23385 | Not Available | Negative | 4198772 - 4199328 | 20035.8 |
| dna-binding protein ybib | C5P43_23390 | Not Available | Negative | 4199469 - 4200431 | 35050.7 |
| atp-dependent dna helicase ding | C5P43_23395 | Not Available | Negative | 4200459 - 4202609 | 81449.9 |
| swarming motility protein ybia | C5P43_23405 | Not Available | Positive | 4202729 - 4203211 | 18614.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





