Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain XJ_F8_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1523103 bp
Thymine Count
1527238 bp
Guanine Count
1556544 bp
Cytosine Count
1557252 bp
Genome Length
6164137 bp
Protein-coding Genes
7060 genes
Non-Coding Genes
408 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional activator rhar | C5P43_22605 | Not Available | Negative | 4069019 - 4069957 | 35638.4 |
| hth-type transcriptional activator rhas | C5P43_22610 | Not Available | Negative | 4069941 - 4070578 | 24909.5 |
| hydrogenase 2 large subunit | C5P43_22615 | Not Available | Positive | 4070579 - 4071754 | 43058.2 |
| ni/fe-hydrogenase b-type cytochrome subunit | C5P43_22620 | Not Available | Positive | 4071773 - 4072480 | 27598.8 |
| hydrogenase 1 maturation protease | C5P43_22625 | Not Available | Positive | 4072477 - 4073064 | 21547.7 |
| hydrogenase-1 operon protein hyae | C5P43_22630 | Not Available | Positive | 4073061 - 4073459 | 14896.6 |
| hydrogenase-1 operon protein hyaf | C5P43_22635 | Not Available | Positive | 4073456 - 4074313 | 31432.5 |
| cytochrome bd-ii ubiquinol oxidase subunit i | C5P43_22640 | Not Available | Positive | 4074447 - 4075991 | 57996.3 |
| arac family transcriptional regulator | C5P43_22655 | Not Available | Negative | 4078320 - 4079117 | 30747.3 |
| ybhb/ybcl family raf kinase inhibitor-like protein | C5P43_22660 | Not Available | Negative | 4079127 - 4079678 | 19403.8 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





