Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain XJ_F8_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1523103 bp
Thymine Count
1527238 bp
Guanine Count
1556544 bp
Cytosine Count
1557252 bp
Genome Length
6164137 bp
Protein-coding Genes
7060 genes
Non-Coding Genes
408 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i-e crispr-associated protein cse2/casb | C5P43_20100 | Not Available | Positive | 3631838 - 3632371 | 20673.7 |
| type i-e crispr-associated protein cas7/cse4/casc | C5P43_20105 | Not Available | Positive | 3632386 - 3633459 | 39168.6 |
| type i-e crispr-associated protein cas5/casd | C5P43_20110 | Not Available | Positive | 3633470 - 3634216 | 28626.0 |
| type i-e crispr-associated protein cas6/cse3/case | C5P43_20115 | Not Available | Positive | 3634198 - 3634848 | 24829.8 |
| subtype i-e crispr-associated endonuclease cas1 | C5P43_20120 | Not Available | Positive | 3634845 - 3635768 | 33470.8 |
| type i-e crispr-associated endoribonuclease cas2 | C5P43_20125 | Not Available | Positive | 3635765 - 3636058 | 11004.4 |
| aminopeptidase | C5P43_20130 | Not Available | Negative | 3636938 - 3637407 | 17123.5 |
| excinuclease abc subunit uvra | C5P43_20135 | Not Available | Negative | 3637408 - 3638750 | 50469.2 |
| hypothetical protein | C5P43_20140 | Not Available | Positive | 3638671 - 3638883 | 8270.36 |
| ssdna-binding protein | C5P43_20145 | Not Available | Positive | 3639004 - 3639540 | 18976.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





