Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain XJ_F8_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1523103 bp
Thymine Count
1527238 bp
Guanine Count
1556544 bp
Cytosine Count
1557252 bp
Genome Length
6164137 bp
Protein-coding Genes
7060 genes
Non-Coding Genes
408 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i-e crispr-associated protein cas5/casd | C5P43_19825 | Not Available | Positive | 3585300 - 3586046 | 28672.1 |
| type i-e crispr-associated protein cas6/cse3/case | C5P43_19830 | Not Available | Positive | 3586028 - 3586678 | 24817.8 |
| type i-e crispr-associated endonuclease cas1 | C5P43_19835 | Not Available | Positive | 3586675 - 3587595 | 33414.7 |
| type i-e crispr-associated endoribonuclease cas2 | C5P43_19840 | Not Available | Positive | 3587595 - 3587888 | 11004.4 |
| aminopeptidase | C5P43_19845 | Not Available | Negative | 3589073 - 3589542 | 17124.6 |
| serine endoprotease | C5P43_19850 | Not Available | Negative | 3589543 - 3589736 | 6534.01 |
| deoxyguanosinetriphosphate triphosphohydrolase | C5P43_19860 | Not Available | Negative | 3589866 - 3591383 | 59384.2 |
| 5'-methylthioadenosine/s-adenosylhomocysteine nucleosidase | C5P43_19865 | Not Available | Positive | 3591467 - 3592165 | 24355.4 |
| cobalamin-binding protein | C5P43_19870 | Not Available | Positive | 3592158 - 3592958 | 29368.4 |
| hypothetical protein | C5P43_19875 | Not Available | Positive | 3592996 - 3593619 | 22129.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





