Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain XJ_F8_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1523103 bp
Thymine Count
1527238 bp
Guanine Count
1556544 bp
Cytosine Count
1557252 bp
Genome Length
6164137 bp
Protein-coding Genes
7060 genes
Non-Coding Genes
408 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| permease | C5P43_18215 | Not Available | Positive | 3305339 - 3306388 | 38568.9 |
| 4'-phosphopantetheinyl transferase | C5P43_18220 | Not Available | Positive | 3306443 - 3307030 | 21738.9 |
| nickel abc transporter, nickel/metallophore periplasmic binding protein | C5P43_18225 | Not Available | Positive | 3307141 - 3308715 | 58791.3 |
| nickel abc transporter permease subunit nikb | C5P43_18230 | Not Available | Positive | 3308715 - 3309659 | 35250.3 |
| nickel abc transporter permease subunit nikc | C5P43_18235 | Not Available | Positive | 3309656 - 3310489 | 30363.8 |
| nickel import atp-binding protein nikd | C5P43_18240 | Not Available | Positive | 3310489 - 3311253 | 26835.1 |
| nickel import atp-binding protein nike | C5P43_18245 | Not Available | Positive | 3311250 - 3312056 | 29700.5 |
| nickel-responsive transcriptional regulator nikr | C5P43_18250 | Not Available | Positive | 3312062 - 3312463 | 15094.7 |
| type ii toxin-antitoxin system hicb family antitoxin | C5P43_18255 | Not Available | Negative | 3312583 - 3312942 | 13403.0 |
| inner membrane transport permease yhhj | C5P43_18265 | Not Available | Negative | 3313273 - 3314397 | 41050.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





