Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain XJ_F8_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1523103 bp
Thymine Count
1527238 bp
Guanine Count
1556544 bp
Cytosine Count
1557252 bp
Genome Length
6164137 bp
Protein-coding Genes
7060 genes
Non-Coding Genes
408 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent rna helicase srmb | C5P43_18025 | Not Available | Negative | 3276180 - 3277514 | 49901.0 |
| trna (adenosine(37)-n6)-methyltransferase trmm | C5P43_18030 | Not Available | Positive | 3277646 - 3278383 | 27209.4 |
| l-aspartate oxidase | C5P43_18035 | Not Available | Negative | 3278368 - 3279990 | 60172.6 |
| ecf rna polymerase sigma-e factor | C5P43_18040 | Not Available | Positive | 3280398 - 3280973 | 21697.0 |
| anti-sigma-e factor rsea | C5P43_18045 | Not Available | Positive | 3281006 - 3281656 | 24322.8 |
| sigma-e factor regulatory protein rseb | C5P43_18050 | Not Available | Positive | 3281656 - 3282612 | 35751.8 |
| soxr reducing system protein rsec | C5P43_18055 | Not Available | Positive | 3282609 - 3283088 | 16626.3 |
| elongation factor 4 | C5P43_18060 | Not Available | Positive | 3283286 - 3285085 | 66574.1 |
| s26 family signal peptidase | C5P43_18065 | Not Available | Positive | 3285101 - 3285330 | 8271.41 |
| holliday junction branch migration protein ruva | C5P43_18070 | Not Available | Positive | 3285423 - 3286034 | 22087.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





