Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain XJ_F8_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1523103 bp
Thymine Count
1527238 bp
Guanine Count
1556544 bp
Cytosine Count
1557252 bp
Genome Length
6164137 bp
Protein-coding Genes
7060 genes
Non-Coding Genes
408 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heme lyase ccmf/nrfe family subunit | C5P43_15260 | Not Available | Positive | 2773648 - 2775366 | 63667.2 |
| heme lyase nrfefg subunit nrff | C5P43_15265 | Not Available | Positive | 2775359 - 2775672 | 11816.3 |
| nad(p)h-flavin reductase | C5P43_15270 | Not Available | Negative | 2775933 - 2776634 | 26243.5 |
| 3-octaprenyl-4-hydroxybenzoate decarboxylase | C5P43_15275 | Not Available | Negative | 2776680 - 2778173 | 55606.8 |
| transcription/translation regulatory transformer protein rfah | C5P43_15280 | Not Available | Positive | 2778340 - 2778828 | 18341.3 |
| tat-linked quality control protein tatd | C5P43_15285 | Not Available | Negative | 2778825 - 2779607 | 29061.7 |
| twin-arginine translocase subunit tatc | C5P43_15290 | Not Available | Negative | 2779649 - 2780425 | 28877.9 |
| twin-arginine translocase subunit tatb | C5P43_15295 | Not Available | Negative | 2780428 - 2780943 | 18421.8 |
| twin-arginine translocase subunit tata | C5P43_15300 | Not Available | Negative | 2780947 - 2781216 | 9663.52 |
| ubiquinone biosynthesis protein ubib | C5P43_15305 | Not Available | Negative | 2781295 - 2782935 | 63206.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





