Escherichia coli strain XJ_F8_1

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain XJ_F8_1 is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. It typically grows at an optimal temperature of 37°C, placing it within the mesophilic temperature range. The strain has a unique biotic relationship, being free-living while also associated with various hosts, including Homo sapiens, Gallus gallus, and multiple other vertebrates and invertebrates. XJ_F8_1 is particularly notable for its association with a wide range of health issues in humans, including urinary tract infections (UTIs), gastrointestinal infections, and neonatal meningitis. It is implicated in severe conditions such as septicemia, hemolytic uremic syndrome (HUS), and even colorectal cancer. These health effects highlight the strain's pathogenicity and its potential to cause significant morbidity. The broad host range of E. coli strain XJ_F8_1, which includes species from various taxonomic groups such as mammals, birds, and plants, suggests a versatile ecological role. This adaptability may facilitate its transmission and persistence in diverse environments, including those associated with human and animal hosts. Understanding the pathogenic mechanisms and ecological interactions of E. coli strain XJ_F8_1 can provide insights into managing infections it causes, as well as its role in the microbiome of its numerous hosts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain XJ_F8_1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain XJ_F8_1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain XJ_F8_1 NODE_2028_length_295_cov_124.512,

Gene Summary

Adenine Count

1523103 bp

Thymine Count

1527238 bp

Guanine Count

1556544 bp

Cytosine Count

1557252 bp

Genome Length

6164137 bp

Protein-coding Genes

7060 genes

Non-Coding Genes

408 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Tail/dna circulation proteinC5P43_04370Not AvailablePositive823825 - 82519549429.5
Tail proteinC5P43_04375Not AvailablePositive825192 - 82627139211.1
Tail proteinC5P43_04380Not AvailablePositive826271 - 82681919568.2
Tail proteinC5P43_04385Not AvailablePositive826816 - 82724416460.8
Baseplate proteinC5P43_04390Not AvailablePositive827231 - 82828938124.1
Tail proteinC5P43_04395Not AvailablePositive828280 - 82886421676.6
Tail proteinC5P43_04400Not AvailablePositive828868 - 82979129598.4
hypothetical proteinC5P43_04405Not AvailablePositive829766 - 8299697778.1
Putative tail fiber assembly proteinC5P43_04410Not AvailableNegative829935 - 83054322076.3
Tail fiber proteinC5P43_04415Not AvailableNegative830543 - 83104017760.2

Displaying genes 21 – 30 of 7468 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total