Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain XJ_F8_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1523103 bp
Thymine Count
1527238 bp
Guanine Count
1556544 bp
Cytosine Count
1557252 bp
Genome Length
6164137 bp
Protein-coding Genes
7060 genes
Non-Coding Genes
408 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | C5P43_14835 | Not Available | Negative | 2689232 - 2689834 | 22605.6 |
| lysr family transcriptional regulator | C5P43_14840 | Not Available | Positive | 2690354 - 2691253 | 33275.5 |
| inner membrane protein yhjd | C5P43_14845 | Not Available | Positive | 2691302 - 2692315 | 37902.6 |
| mfs transporter | C5P43_14850 | Not Available | Positive | 2692726 - 2694048 | 47210.9 |
| asma family protein | C5P43_14855 | Not Available | Negative | 2694282 - 2696342 | 74504.9 |
| cyclic di-gmp phosphodiesterase yhjh | C5P43_14860 | Not Available | Negative | 2696412 - 2697179 | 29602.9 |
| hypothetical protein | C5P43_14865 | Not Available | Positive | 2697148 - 2697327 | 6805.66 |
| ketodeoxygluconokinase | C5P43_14870 | Not Available | Positive | 2697411 - 2698234 | 30371.9 |
| fimbrial protein | C5P43_14875 | Not Available | Negative | 2698235 - 2698638 | 14655.6 |
| type 1 fimbrial protein | C5P43_14880 | Not Available | Negative | 2698697 - 2699200 | 18203.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





