Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain XJ_F8_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1523103 bp
Thymine Count
1527238 bp
Guanine Count
1556544 bp
Cytosine Count
1557252 bp
Genome Length
6164137 bp
Protein-coding Genes
7060 genes
Non-Coding Genes
408 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system baseplate subunit tsse | C5P43_10850 | Not Available | Positive | 2006995 - 2007408 | 15494.0 |
| type vi secretion system baseplate subunit tssf | C5P43_10855 | Not Available | Positive | 2007412 - 2009262 | 71190.0 |
| type vi secretion system lipoprotein tssj | C5P43_10870 | Not Available | Positive | 2011610 - 2012134 | 19395.0 |
| type vi secretion system baseplate subunit tssk | C5P43_10875 | Not Available | Positive | 2012137 - 2013468 | 49981.9 |
| hypothetical protein | C5P43_10880 | Not Available | Positive | 2013473 - 2014234 | 29415.8 |
| type vi secretion system atpase tssh | C5P43_10885 | Not Available | Positive | 2014243 - 2017002 | 100754.0 |
| type vi secretion system-associated protein tago | C5P43_10890 | Not Available | Positive | 2016999 - 2017742 | 26442.7 |
| type vi secretion system protein tssa | C5P43_10895 | Not Available | Positive | 2017681 - 2019159 | 54806.2 |
| type vi secretion system membrane subunit tssm | C5P43_10900 | Not Available | Positive | 2019238 - 2021813 | 99140.0 |
| transcriptional regulator lldr | C5P43_10905 | Not Available | Negative | 2021814 - 2022470 | 24561.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





