Escherichia coli strain YH17148

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain YH17148 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic lifestyle, enabling it to thrive in both aerobic and anaerobic environments. This strain is motile, possessing flagella that facilitate movement. YH17148 is adapted to a mesophilic temperature range, with an optimal growth temperature of 37°C, which is typical for many pathogenic E. coli strains. This strain is primarily host-associated, with a diverse range of hosts including Homo sapiens (humans), Gallus gallus (chickens), Bos taurus (cattle), and various other vertebrates and invertebrates such as Primates, Aves, and Solanum lycopersicum (tomato). The versatility in host range indicates a complex ecological role, where YH17148 may contribute to both commensal and pathogenic relationships. YH17148 is linked to numerous health effects, particularly in humans, where it is associated with urinary tract infections (UTIs), gastrointestinal infections, and serious conditions such as neonatal meningitis and hemolytic uremic syndrome (HUS). These associations highlight the strain's pathogenic potential, as it can cause a wide array of diseases ranging from mild diarrhea to severe systemic infections. Given its free-living biotic relationship and capacity to impact multiple host species, E. coli strain YH17148 exemplifies the complex interactions between microorganisms and their hosts. Understanding its pathogenicity and ecological niche is crucial for managing infections and assessing risks in both human and animal health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain YH17148

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain YH17148
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain YH17148 scaffold161, whole genome shotgun

Gene Summary

Adenine Count

1309291 bp

Thymine Count

1319867 bp

Guanine Count

1358389 bp

Cytosine Count

1330421 bp

Genome Length

5318127 bp

Protein-coding Genes

5031 genes

Non-Coding Genes

440 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
c4-dicarboxylate abc transporterC5P01_19670Not AvailableNegative3800846 - 38009654589.67
phospholipid:lipid a palmitoyltransferaseC5P01_19675Not AvailablePositive3801451 - 380201121770.6
cold-shock protein cspeC5P01_19680Not AvailablePositive3802186 - 38023957463.84
fluoride efflux transporter crcbC5P01_19685Not AvailableNegative3802450 - 380283313766.1
hydrolase ybemC5P01_19690Not AvailablePositive3802926 - 380371428683.0
twin-arginine translocase subunit tataC5P01_19695Not AvailablePositive3803843 - 38040467024.71
lipoyl synthaseC5P01_19700Not AvailableNegative3804147 - 380511236073.8
dna-binding proteinC5P01_19705Not AvailableNegative3805211 - 38053244359.19
lysr family transcriptional regulatorC5P01_19710Not AvailableNegative3805321 - 380627435950.4
hypothetical proteinC5P01_19715Not AvailablePositive3806332 - 38064815670.97

Displaying genes 3981 – 3990 of 5471 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total