Apibacter sp. wkB309

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Weeksellaceae

Genus

Apibacter

Description

Apibacter sp. wkB309 is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, indicating a streamlined genomic organization that may influence its replication and adaptability. This species is documented under the accession number PSZL00000000.1, which provides a reference point for further study and genetic analysis. The Gram-negative classification of Apibacter sp. wkB309 suggests that it possesses an outer membrane, which could contribute to its resilience in various environments. This structural feature is significant, as it can affect the bacterium's interactions with other microorganisms and its surroundings. Given its rod shape and single replicon, Apibacter sp. wkB309 may have specific ecological roles, potentially including nutrient cycling or interactions with other microbial communities. The simplicity of having a single replicon could enable more efficient regulation of gene expression and replication processes, which may provide advantages in specific habitats. Overall, the traits of Apibacter sp. wkB309 suggest it could be a specialized organism within its ecological niche, with potential implications for broader ecological interactions and functions. Further research could elucidate its role in microbial ecosystems, contribute to our understanding of microbial diversity, and inform potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusApibacter
SpeciesApibacter sp. wkB309
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Apibacter sp. wkB309 wkB309_combined_R1__paired__contig_3, whole

Gene Summary

Adenine Count

784455 bp

Thymine Count

803709 bp

Guanine Count

344750 bp

Cytosine Count

356169 bp

Genome Length

2289083 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
susc/raga family tonb-linked outer membrane proteinC4S75_00405Not AvailableNegative113822 - 116893113693.0
translation initiation factor if-2C4S75_00410Not AvailableNegative117143 - 119989105936.0
transcription termination/antitermination protein nusaC4S75_00415Not AvailableNegative120053 - 12128847386.3
ribosome assembly cofactor rimpC4S75_00420Not AvailableNegative121308 - 12177517837.3
hypothetical proteinC4S75_00425Not AvailableNegative121983 - 12302938826.8
hypothetical proteinC4S75_00430Not AvailablePositive123248 - 12399428143.4
dna polymerase iii subunit epsilonC4S75_00435Not AvailablePositive123975 - 12473929458.2
2-hydroxyhepta-2,4-diene-1,7-dioate isomeraseC4S75_00440Not AvailablePositive124736 - 12534423238.7
hypothetical proteinC4S75_00445Not AvailableNegative125350 - 12604526305.5
5-methyltetrahydropteroyltriglutamate-- homocysteine s-methyltransferaseC4S75_00450Not AvailableNegative126455 - 12876188402.7

Displaying genes 81 – 90 of 1942 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.