Apibacter sp. wkB309

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Weeksellaceae

Genus

Apibacter

Description

Apibacter sp. wkB309 is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, indicating a streamlined genomic organization that may influence its replication and adaptability. This species is documented under the accession number PSZL00000000.1, which provides a reference point for further study and genetic analysis. The Gram-negative classification of Apibacter sp. wkB309 suggests that it possesses an outer membrane, which could contribute to its resilience in various environments. This structural feature is significant, as it can affect the bacterium's interactions with other microorganisms and its surroundings. Given its rod shape and single replicon, Apibacter sp. wkB309 may have specific ecological roles, potentially including nutrient cycling or interactions with other microbial communities. The simplicity of having a single replicon could enable more efficient regulation of gene expression and replication processes, which may provide advantages in specific habitats. Overall, the traits of Apibacter sp. wkB309 suggest it could be a specialized organism within its ecological niche, with potential implications for broader ecological interactions and functions. Further research could elucidate its role in microbial ecosystems, contribute to our understanding of microbial diversity, and inform potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusApibacter
SpeciesApibacter sp. wkB309
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Apibacter sp. wkB309 wkB309_combined_R1__paired__contig_3, whole

Gene Summary

Adenine Count

784455 bp

Thymine Count

803709 bp

Guanine Count

344750 bp

Cytosine Count

356169 bp

Genome Length

2289083 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nif3-like dinuclear metal center hexameric proteinC4S75_07775Not AvailableNegative1788638 - 178973841092.6
50s ribosomal protein l9C4S75_07780Not AvailableNegative1789862 - 179032616675.1
30s ribosomal protein s18C4S75_07785Not AvailableNegative1790347 - 179065211634.3
30s ribosomal protein s6C4S75_07790Not AvailableNegative1790656 - 179099713234.0
3-dehydroquinate synthaseC4S75_07795Not AvailableNegative1791168 - 179221739704.2
hypothetical proteinC4S75_07800Not AvailableNegative1792242 - 179294625673.3
gtp cyclohydrolaseC4S75_07805Not AvailablePositive1793073 - 179419744129.3
succinate dehydrogenase/fumarate reductase iron-sulfur subunitC4S75_07810Not AvailableNegative1794420 - 179519628246.0
fumarate reductase/succinate dehydrogenase flavoprotein subunitC4S75_07815Not AvailableNegative1795218 - 179722774859.7
succinate dehydrogenaseC4S75_07820Not AvailableNegative1797256 - 179794225970.4

Displaying genes 1511 – 1520 of 1942 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.