Apibacter sp. wkB309

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Weeksellaceae

Genus

Apibacter

Description

Apibacter sp. wkB309 is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, indicating a streamlined genomic organization that may influence its replication and adaptability. This species is documented under the accession number PSZL00000000.1, which provides a reference point for further study and genetic analysis. The Gram-negative classification of Apibacter sp. wkB309 suggests that it possesses an outer membrane, which could contribute to its resilience in various environments. This structural feature is significant, as it can affect the bacterium's interactions with other microorganisms and its surroundings. Given its rod shape and single replicon, Apibacter sp. wkB309 may have specific ecological roles, potentially including nutrient cycling or interactions with other microbial communities. The simplicity of having a single replicon could enable more efficient regulation of gene expression and replication processes, which may provide advantages in specific habitats. Overall, the traits of Apibacter sp. wkB309 suggest it could be a specialized organism within its ecological niche, with potential implications for broader ecological interactions and functions. Further research could elucidate its role in microbial ecosystems, contribute to our understanding of microbial diversity, and inform potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusApibacter
SpeciesApibacter sp. wkB309
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Apibacter sp. wkB309 wkB309_combined_R1__paired__contig_3, whole

Gene Summary

Adenine Count

784455 bp

Thymine Count

803709 bp

Guanine Count

344750 bp

Cytosine Count

356169 bp

Genome Length

2289083 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcriptional regulatorC4S75_09510Not AvailablePositive2196103 - 219651015711.9
dihydrolipoyl dehydrogenaseC4S75_09515Not AvailableNegative2196681 - 219808451151.0
hypothetical proteinC4S75_09520Not AvailableNegative2198240 - 219879421774.6
glycine--trna ligaseC4S75_09525Not AvailableNegative2198973 - 220051159190.6
30s ribosomal protein s21C4S75_09530Not AvailablePositive2200729 - 22009237590.4
integraseC4S75_09535Not AvailablePositive2200994 - 220191435779.1
ribosome-associated translation inhibitor raiaC4S75_09540Not AvailablePositive2201904 - 220219410945.5
elongation factor tuC4S75_09565Not AvailablePositive2202906 - 220409343276.9
preprotein translocase subunit seceC4S75_09575Not AvailablePositive2204226 - 22044327694.49
transcription termination/antitermination factor nusgC4S75_09580Not AvailablePositive2204445 - 220499020744.5

Displaying genes 1851 – 1860 of 1942 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.