Pseudoclavibacter sp. RFBB5 RFBB5_2119

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Pseudoclavibacter

Description

Pseudoclavibacter sp. RFBB5, identified by the accession number PSTZ00000000.1, is characterized by having a single replicon. This trait indicates a streamlined genomic organization, which can be advantageous for certain ecological niches or metabolic pathways. The presence of only one replicon might suggest a more stable genetic structure, potentially allowing for efficient replication and maintenance of its genomic integrity. The unique characteristics of Pseudoclavibacter sp. RFBB5 may position it within specific ecological roles, such as in soil or plant-associated environments, where such streamlined genomic features could facilitate adaptation to fluctuating conditions. The organism's single replicon could also imply a reduced metabolic burden, allowing it to thrive in environments with limited resources. Understanding the genomic structure of Pseudoclavibacter sp. RFBB5 contributes to our knowledge of microbial diversity and adaptability, particularly in the context of environmental microbiology. The analysis of its genomic traits may provide insights into its ecological interactions and potential applications in biotechnology or agriculture, especially if it possesses beneficial traits related to plant growth or soil health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusPseudoclavibacter
SpeciesPseudoclavibacter sp. RFBB5
StrainRFBB5_2119

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoclavibacter sp. RFBB5 RFBB5_2119, whole genome shotgun

Gene Summary

Adenine Count

597812 bp

Thymine Count

599336 bp

Guanine Count

1292327 bp

Cytosine Count

1284950 bp

Genome Length

3774425 bp

Protein-coding Genes

3391 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
iron transporter permeaseC5B97_13730Not AvailableNegative2938093 - 293985961508.1
iron abc transporter substrate-binding proteinC5B97_13735Not AvailableNegative2939875 - 294091235871.2
dna-binding response regulatorC5B97_13740Not AvailableNegative2941109 - 294180425520.7
sensor histidine kinaseC5B97_13745Not AvailableNegative2941801 - 294269732578.4
sodium:proton exchangerC5B97_13755Not AvailableNegative2943266 - 294448942240.3
polysaccharide deacetylaseC5B97_13760Not AvailablePositive2945568 - 294635628022.9
hypothetical proteinC5B97_13765Not AvailablePositive2946619 - 29468508300.51
hypothetical proteinC5B97_13770Not AvailablePositive2946847 - 294751825631.2
padr family transcriptional regulatorC5B97_13775Not AvailableNegative2947576 - 294823824014.1
nudix hydrolaseC5B97_13780Not AvailableNegative2948357 - 294878215221.1

Displaying genes 2721 – 2730 of 3488 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.