Pseudoclavibacter sp. RFBB5 RFBB5_2119

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Pseudoclavibacter

Description

Pseudoclavibacter sp. RFBB5, identified by the accession number PSTZ00000000.1, is characterized by having a single replicon. This trait indicates a streamlined genomic organization, which can be advantageous for certain ecological niches or metabolic pathways. The presence of only one replicon might suggest a more stable genetic structure, potentially allowing for efficient replication and maintenance of its genomic integrity. The unique characteristics of Pseudoclavibacter sp. RFBB5 may position it within specific ecological roles, such as in soil or plant-associated environments, where such streamlined genomic features could facilitate adaptation to fluctuating conditions. The organism's single replicon could also imply a reduced metabolic burden, allowing it to thrive in environments with limited resources. Understanding the genomic structure of Pseudoclavibacter sp. RFBB5 contributes to our knowledge of microbial diversity and adaptability, particularly in the context of environmental microbiology. The analysis of its genomic traits may provide insights into its ecological interactions and potential applications in biotechnology or agriculture, especially if it possesses beneficial traits related to plant growth or soil health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusPseudoclavibacter
SpeciesPseudoclavibacter sp. RFBB5
StrainRFBB5_2119

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoclavibacter sp. RFBB5 RFBB5_2119, whole genome shotgun

Gene Summary

Adenine Count

597812 bp

Thymine Count

599336 bp

Guanine Count

1292327 bp

Cytosine Count

1284950 bp

Genome Length

3774425 bp

Protein-coding Genes

3391 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad-dependent dehydrataseC5B97_12920Not AvailableNegative2769565 - 277066240175.1
recombinase recqC5B97_12925Not AvailableNegative2770742 - 277244261048.8
2,5-diketo-d-gluconic acid reductaseC5B97_12930Not AvailableNegative2772645 - 277348731144.8
atp-dependent rna helicase hrpaC5B97_12935Not AvailablePositive2773624 - 2777553145786.0
short-chain dehydrogenaseC5B97_12940Not AvailableNegative2777643 - 277839825391.2
alpha-amylaseC5B97_12945Not AvailableNegative2778603 - 278030662302.3
peptide abc transporter atp-binding proteinC5B97_12950Not AvailableNegative2780390 - 278120529786.0
amino acid abc transporter permeaseC5B97_12955Not AvailableNegative2781202 - 278348781108.2
glutamate decarboxylaseC5B97_12960Not AvailableNegative2783726 - 278511751324.9
hypothetical proteinC5B97_12965Not AvailablePositive2785172 - 278684259931.6

Displaying genes 2561 – 2570 of 3488 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.