Pseudoclavibacter sp. RFBB5 RFBB5_2119

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Pseudoclavibacter

Description

Pseudoclavibacter sp. RFBB5, identified by the accession number PSTZ00000000.1, is characterized by having a single replicon. This trait indicates a streamlined genomic organization, which can be advantageous for certain ecological niches or metabolic pathways. The presence of only one replicon might suggest a more stable genetic structure, potentially allowing for efficient replication and maintenance of its genomic integrity. The unique characteristics of Pseudoclavibacter sp. RFBB5 may position it within specific ecological roles, such as in soil or plant-associated environments, where such streamlined genomic features could facilitate adaptation to fluctuating conditions. The organism's single replicon could also imply a reduced metabolic burden, allowing it to thrive in environments with limited resources. Understanding the genomic structure of Pseudoclavibacter sp. RFBB5 contributes to our knowledge of microbial diversity and adaptability, particularly in the context of environmental microbiology. The analysis of its genomic traits may provide insights into its ecological interactions and potential applications in biotechnology or agriculture, especially if it possesses beneficial traits related to plant growth or soil health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusPseudoclavibacter
SpeciesPseudoclavibacter sp. RFBB5
StrainRFBB5_2119

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoclavibacter sp. RFBB5 RFBB5_2119, whole genome shotgun

Gene Summary

Adenine Count

597812 bp

Thymine Count

599336 bp

Guanine Count

1292327 bp

Cytosine Count

1284950 bp

Genome Length

3774425 bp

Protein-coding Genes

3391 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amine oxidaseC5B97_08160Not AvailablePositive1754059 - 175575361657.7
glutaminaseC5B97_08165Not AvailablePositive1755823 - 175680934881.8
glutaminaseC5B97_08170Not AvailablePositive1756952 - 175786632625.6
hypothetical proteinC5B97_08175Not AvailablePositive1758305 - 175882018029.3
mfs transporterC5B97_08180Not AvailableNegative1758842 - 176010443878.5
Trna-proNot AvailableNot AvailablePositive1760318 - 1760391Not Available
hypothetical proteinC5B97_08190Not AvailableNegative1761615 - 176369677060.7
dead/deah box helicaseC5B97_08195Not AvailableNegative1763977 - 1766943108057.0
duf1837 domain-containing proteinC5B97_08200Not AvailableNegative1766940 - 176775229182.6
hypothetical proteinC5B97_08210Not AvailableNegative1769072 - 176956017580.0

Displaying genes 1681 – 1690 of 3488 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.