Pseudoclavibacter sp. RFBB5 RFBB5_2119

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Pseudoclavibacter

Description

Pseudoclavibacter sp. RFBB5, identified by the accession number PSTZ00000000.1, is characterized by having a single replicon. This trait indicates a streamlined genomic organization, which can be advantageous for certain ecological niches or metabolic pathways. The presence of only one replicon might suggest a more stable genetic structure, potentially allowing for efficient replication and maintenance of its genomic integrity. The unique characteristics of Pseudoclavibacter sp. RFBB5 may position it within specific ecological roles, such as in soil or plant-associated environments, where such streamlined genomic features could facilitate adaptation to fluctuating conditions. The organism's single replicon could also imply a reduced metabolic burden, allowing it to thrive in environments with limited resources. Understanding the genomic structure of Pseudoclavibacter sp. RFBB5 contributes to our knowledge of microbial diversity and adaptability, particularly in the context of environmental microbiology. The analysis of its genomic traits may provide insights into its ecological interactions and potential applications in biotechnology or agriculture, especially if it possesses beneficial traits related to plant growth or soil health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusPseudoclavibacter
SpeciesPseudoclavibacter sp. RFBB5
StrainRFBB5_2119

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoclavibacter sp. RFBB5 RFBB5_2119, whole genome shotgun

Gene Summary

Adenine Count

597812 bp

Thymine Count

599336 bp

Guanine Count

1292327 bp

Cytosine Count

1284950 bp

Genome Length

3774425 bp

Protein-coding Genes

3391 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
branched-chain amino acid transporter azldC5B97_06185Not AvailableNegative1315388 - 131571111387.3
branched-chain amino acid abc transporter permeaseC5B97_06190Not AvailableNegative1315704 - 131653128547.2
arsr family transcriptional regulatorC5B97_06195Not AvailablePositive1316695 - 131712916358.7
mfs transporterC5B97_06200Not AvailablePositive1317126 - 131834641450.9
nad(p)-dependent dehydrogenaseC5B97_06205Not AvailablePositive1318493 - 131937430985.2
rho termination factorC5B97_06210Not AvailablePositive1319431 - 131970910385.0
mbl fold metallo-hydrolaseC5B97_06215Not AvailableNegative1319774 - 132043623885.7
Trna-gluNot AvailableNot AvailablePositive1320610 - 1320685Not Available
abc transporterC5B97_06225Not AvailablePositive1320952 - 132260758604.9
serine/threonine-protein phosphataseC5B97_06230Not AvailablePositive1322664 - 132362934180.9

Displaying genes 1291 – 1300 of 3488 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.