Escherichia coli strain DP254

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain DP254 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain thrives optimally at 37.0°C, which corresponds to the physiological temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli DP254 can grow in both aerobic and anaerobic environments, reflecting its versatility in utilizing various metabolic pathways depending on the availability of oxygen. The Gram-negative cell wall structure of E. coli strain DP254 contributes to its resilience in diverse environments, as it possesses an outer membrane that can act as a barrier to certain antimicrobial agents. This feature, combined with its ability to thrive in host-associated habitats, suggests that E. coli DP254 may play a significant role in the microbial communities of its host, potentially influencing nutrient cycling and host health. The ability of E. coli DP254 to exist in both aerobic and anaerobic conditions not only highlights its metabolic adaptability but may also provide insights into its ecological interactions within the gut microbiome. Such characteristics underscore the importance of this strain in understanding microbial dynamics and interactions in host-associated ecosystems, where it may contribute to the overall homeostasis of the microbiota.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain DP254
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli strain DP254


Gene Summary

Adenine Count

1296665 bp

Thymine Count

1296901 bp

Guanine Count

1331328 bp

Cytosine Count

1307948 bp

Genome Length

5232842 bp

Protein-coding Genes

5112 genes

Non-Coding Genes

251 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+3385888 - 3385899Not Available
IntegraseC4K41_17165Not Available+3389315 - 339041241786.2
Hypothetical proteinC4K41_17170Not Available+3390474 - 33907229392.14
Hypothetical proteinC4K41_17175Not Available-3390840 - 339112710796.3
Tail fiber proteinC4K41_17180Not Available-3391170 - 339221038014.4
Hypothetical proteinC4K41_17185Not Available-3392220 - 339250110723.6
Putative tail fiber proteinC4K41_17190Not Available-3392501 - 339487982965.9
Lom proteinC4K41_17195Not Available-3394944 - 339554321879.3
Putative tail fiber component jC4K41_17200Not Available-3395611 - 339633025866.8
AttrNot AvailableNot Available+3396164 - 3396175Not Available

Displaying genes 1 – 10 of 5363 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

120 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da

Displaying 1–10 of 120 metabolites