Pseudoalteromonas rubra strain S1946

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas rubra strain S1946 is a marine bacterium primarily associated with marine sponges, specifically the host Mycale grandis. This strain exhibits a rod-shaped morphology, which is characteristic of many members within the Pseudoalteromonas genus. The genomic characterization of P. rubra strain S1946 reveals that it contains a single replicon, indicating a streamlined genetic structure that can be advantageous for adaptation in its marine environment. The strain is cataloged under the accession number PPUZ00000000.1, which serves as a reference for researchers studying its genetics and potential applications. The association of P. rubra with marine sponges highlights its ecological role within marine ecosystems. Sponges are known to harbor diverse microbial communities, and these interactions can be critical for nutrient cycling and overall sponge health. The presence of P. rubra in Mycale grandis suggests that it may contribute to the sponge's ability to thrive in its marine habitat, potentially through processes such as nutrient acquisition or defense against pathogens. In summary, Pseudoalteromonas rubra strain S1946's rod shape, association with marine sponges, and single replicon structure reflect its adaptation to marine environments. Its relationship with Mycale grandis could provide insights into the symbiotic dynamics of marine microbial communities and their ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas rubra
Strainstrain S1946

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine; marine sponge
Biotic relationshipNot Available
Host(s)Mycale grandis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas rubra strain S1946

Gene Summary

Adenine Count

1430911 bp

Thymine Count

1429073 bp

Guanine Count

1376391 bp

Cytosine Count

1379663 bp

Genome Length

5616038 bp

Protein-coding Genes

4513 genes

Non-Coding Genes

161 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Putative dna-binding response regulatorC3B51_05720Not AvailablePositive1452297 - 145340641158.3
hypothetical proteinC3B51_05725Not AvailablePositive1453527 - 145387112709.2
Phage-related tail proteinC3B51_05730Not AvailableNegative1454029 - 145503936435.3
Putative tail protein xC3B51_05735Not AvailableNegative1455042 - 14552547564.16
Putative tail proteinC3B51_05740Not AvailableNegative1455264 - 145571917187.5
Tape measure proteinC3B51_05745Not AvailableNegative1455747 - 1459418123756.0
Hypothetical proteinC3B51_05750Not AvailableNegative1459716 - 14599739848.78
Putative tail proteinC3B51_05755Not AvailableNegative1460071 - 146058018756.8
Contractile tail sheath proteinC3B51_05760Not AvailableNegative1460580 - 146174041448.0
Putative baseplate assembly protein with lysozymeC3B51_05765Not AvailableNegative1461865 - 146220012025.7

Displaying genes 1 – 10 of 4674 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.