Pseudoalteromonas rubra strain S1946

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas rubra strain S1946 is a marine bacterium primarily associated with marine sponges, specifically the host Mycale grandis. This strain exhibits a rod-shaped morphology, which is characteristic of many members within the Pseudoalteromonas genus. The genomic characterization of P. rubra strain S1946 reveals that it contains a single replicon, indicating a streamlined genetic structure that can be advantageous for adaptation in its marine environment. The strain is cataloged under the accession number PPUZ00000000.1, which serves as a reference for researchers studying its genetics and potential applications. The association of P. rubra with marine sponges highlights its ecological role within marine ecosystems. Sponges are known to harbor diverse microbial communities, and these interactions can be critical for nutrient cycling and overall sponge health. The presence of P. rubra in Mycale grandis suggests that it may contribute to the sponge's ability to thrive in its marine habitat, potentially through processes such as nutrient acquisition or defense against pathogens. In summary, Pseudoalteromonas rubra strain S1946's rod shape, association with marine sponges, and single replicon structure reflect its adaptation to marine environments. Its relationship with Mycale grandis could provide insights into the symbiotic dynamics of marine microbial communities and their ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas rubra
Strainstrain S1946

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine; marine sponge
Biotic relationshipNot Available
Host(s)Mycale grandis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas rubra strain S1946

Gene Summary

Adenine Count

1430911 bp

Thymine Count

1429073 bp

Guanine Count

1376391 bp

Cytosine Count

1379663 bp

Genome Length

5616038 bp

Protein-coding Genes

4513 genes

Non-Coding Genes

161 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein-tyrosine sulfotransferaseC3B51_03320Not AvailableNegative830974 - 83241955286.4
tonb-dependent receptorC3B51_03325Not AvailableNegative832512 - 83517295901.8
hypothetical proteinC3B51_03330Not AvailablePositive835618 - 83599814055.7
leucyl aminopeptidaseC3B51_03335Not AvailablePositive836113 - 83748049540.5
histidine kinaseC3B51_03340Not AvailablePositive837615 - 83873641911.9
dna-binding response regulatorC3B51_03345Not AvailablePositive838739 - 83957231198.9
glycosyl hydrolase family 16C3B51_03350Not AvailablePositive840014 - 84267495515.5
tonb-dependent receptorC3B51_03355Not AvailablePositive842737 - 845691108222.0
glucose/galactose mfs transporterC3B51_03360Not AvailablePositive845766 - 84701343669.4
beta-glucosidaseC3B51_03365Not AvailablePositive847036 - 84956190806.9

Displaying genes 731 – 740 of 4674 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.