Pseudoalteromonas rubra strain S1946

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas rubra strain S1946 is a marine bacterium primarily associated with marine sponges, specifically the host Mycale grandis. This strain exhibits a rod-shaped morphology, which is characteristic of many members within the Pseudoalteromonas genus. The genomic characterization of P. rubra strain S1946 reveals that it contains a single replicon, indicating a streamlined genetic structure that can be advantageous for adaptation in its marine environment. The strain is cataloged under the accession number PPUZ00000000.1, which serves as a reference for researchers studying its genetics and potential applications. The association of P. rubra with marine sponges highlights its ecological role within marine ecosystems. Sponges are known to harbor diverse microbial communities, and these interactions can be critical for nutrient cycling and overall sponge health. The presence of P. rubra in Mycale grandis suggests that it may contribute to the sponge's ability to thrive in its marine habitat, potentially through processes such as nutrient acquisition or defense against pathogens. In summary, Pseudoalteromonas rubra strain S1946's rod shape, association with marine sponges, and single replicon structure reflect its adaptation to marine environments. Its relationship with Mycale grandis could provide insights into the symbiotic dynamics of marine microbial communities and their ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas rubra
Strainstrain S1946

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine; marine sponge
Biotic relationshipNot Available
Host(s)Mycale grandis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas rubra strain S1946

Gene Summary

Adenine Count

1430911 bp

Thymine Count

1429073 bp

Guanine Count

1376391 bp

Cytosine Count

1379663 bp

Genome Length

5616038 bp

Protein-coding Genes

4513 genes

Non-Coding Genes

161 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-oxoglutarate dehydrogenase e1 componentC3B51_04820Not AvailableNegative1239608 - 1242421105097.0
succinate dehydrogenase iron-sulfur subunitC3B51_04825Not AvailableNegative1242505 - 124322426711.3
succinate dehydrogenase flavoprotein subunitC3B51_04830Not AvailableNegative1243235 - 124500764763.4
succinate dehydrogenase, hydrophobic membrane anchor proteinC3B51_04835Not AvailableNegative1245008 - 124535512773.0
succinate dehydrogenase, cytochrome b556 subunitC3B51_04840Not AvailableNegative1245346 - 124572313946.2
citrate synthaseC3B51_04845Not AvailablePositive1246135 - 124742147824.3
cysteine desulfurase csdaC3B51_04850Not AvailablePositive1247552 - 124877544415.6
sufe proteinC3B51_04855Not AvailablePositive1248778 - 124918515154.6
trna cyclic n6-threonylcarbamoyladenosine(37) synthase tcdaC3B51_04860Not AvailableNegative1249208 - 125000228681.3
tigr01621 family pseudouridine synthaseC3B51_04865Not AvailableNegative1250004 - 125066924599.4

Displaying genes 1021 – 1030 of 4674 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.