Pseudomonas gingeri NCPPB 3146 = LMG 5327

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas gingeri NCPPB 3146, also designated as LMG 5327, is a bacterial strain characterized by possessing a single replicon. This trait is significant as it may indicate a streamlined genomic structure, which can influence its adaptability and metabolic capabilities within its ecological niche. The strain is cataloged under the accession number POWE00000000.1, providing a reference for researchers to access its genomic information. While specific metabolic or ecological functions of Pseudomonas gingeri are not detailed, the genus Pseudomonas is well-known for its versatility in various environments, including soil and water. Members of this genus often play crucial roles in biogeochemical cycles and can exhibit beneficial traits, such as plant growth promotion and bioremediation potential. Overall, the characterization of Pseudomonas gingeri NCPPB 3146 = LMG 5327 underscores the importance of studying microbial diversity. Understanding the genomic features of such strains can contribute to insights into their ecological roles and potential applications in agriculture and environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas gingeri
StrainNCPPB 3146 = LMG 5327

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas gingeri NCPPB 3146 = LMG 5327
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas gingeri NCPPB 3146 = LMG 5327 contig193, whole genome

Gene Summary

Adenine Count

1423580 bp

Thymine Count

1432393 bp

Guanine Count

2403283 bp

Cytosine Count

2384590 bp

Genome Length

7643846 bp

Protein-coding Genes

6770 genes

Non-Coding Genes

158 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
1-deoxy-d-xylulose-5-phosphate reductoisomeraseCCU68_19725Not AvailableNegative4365261 - 436643341554.4
hypothetical proteinCCU68_19730Not AvailableNegative4366436 - 436736234742.8
flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthaseCCU68_19735Not AvailableNegative4367431 - 436871445936.6
hypothetical proteinCCU68_19740Not AvailableNegative4368711 - 436970036953.0
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseCCU68_19745Not AvailableNegative4369724 - 437065633554.3
1-deoxy-d-xylulose-5-phosphate synthaseCCU68_19750Not AvailableNegative4370653 - 437257268540.4
isopentenyl-diphosphate delta-isomeraseCCU68_19755Not AvailableNegative4372679 - 437324521553.7
efflux rnd transporter periplasmic adaptor subunitCCU68_19760Not AvailablePositive4373581 - 437467238024.6
multidrug transporter subunit mdtcCCU68_19765Not AvailablePositive4374683 - 4377748109656.0
multidrug transporter subunit mdtcCCU68_19770Not AvailablePositive4377754 - 4380873110372.0

Displaying genes 3971 – 3980 of 6928 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.